RNA id: unassigned_transcript_1723


Basic Information

Item Value
RNA id unassigned_transcript_1723
length 375
RNA type V_gene_segment
GC content 0.50
exon number 2
gene id LOC120555099
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 248595 ~ 249076 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgactttgatctccgtcctcatctggactctcctctgctgctgcttcacagagtccagaggccaggtcacagtgactcagcctggagcagtgagctctgctctgggaggctccgtctccatcagctgtaggaccagTCAGAATGTTCATGTTTGGAGCAGCTACAAAGGTTTAGCctggtaccaacagagagatggagaaactcctAAACTGCTCATTTACGGTGCTAGCTCTCGACAATCAGGGATTCCAGatcgttttacaggcagtggatcaaactctgacttcactctgaccatcagtggagtccagactgaagatgcagcagtttactactgtcagagtTATCACAGTGGGGgtgtgttcacacagtga

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection
ko05310 Asthma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322830 lncRNA upstream 2717 14747 ~ 245878 (+) False G237623
TU322858 lncRNA downstream 13919 262995 ~ 316779 (+) True G237624
TU322857 lncRNA downstream 25956 275032 ~ 306212 (+) False G237624
TU322895 lncRNA downstream 129358 378434 ~ 378954 (+) False LOC120555106
TU322871 lncRNA downstream 144879 393955 ~ 394462 (+) True G237631
TU322878 lncRNA downstream 170821 419897 ~ 420275 (+) True G237637
unassigned_transcript_1721 other upstream 4669 243414 ~ 243926 (+) True LOC120555143
unassigned_transcript_1720 other upstream 12647 235423 ~ 235948 (+) True LOC120555122
unassigned_transcript_1719 other upstream 22639 225484 ~ 225956 (+) True LOC120555097
unassigned_transcript_1718 other upstream 29332 218791 ~ 219263 (+) True LOC120555096
unassigned_transcript_1717 other upstream 34528 213580 ~ 214067 (+) True LOC120555095
unassigned_transcript_1724 other downstream 7406 256482 ~ 257112 (+) True LOC120555148
unassigned_transcript_1726 other downstream 16746 265822 ~ 266488 (+) True LOC120555155
TU322856 other downstream 20711 269787 ~ 275359 (+) False G237624
unassigned_transcript_1728 other downstream 20849 269925 ~ 270483 (+) True LOC120555159
unassigned_transcript_1729 other downstream 25801 274877 ~ 275367 (+) True LOC120555100

Expression Profile