RNA id: unassigned_transcript_1735


Basic Information

Item Value
RNA id unassigned_transcript_1735
length 581
RNA type C_gene_segment
GC content 0.54
exon number 2
gene id LOC120555165
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 318931 ~ 320691 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtatcactgtggtgGACTTTTggtggaggaaccagactgaATGTTGGAAGTGATGTCCGTCCCACCCTGACGGTGCTGCCCCCCTCCAGTGATGAGCTGCTGCAGGGGAAGGCCACGCTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAGTCTGGCCTGGAAGGtggacggcagcagcagcagcagcagctgggaggagagcaggagcCCCGGGGTGCTGGGGAAGGACGGCAAATACAGCTGGAGCAGCACCCTGAGGCTCCCTAAAGACCAGTGGGAGAAGGTGGGCTCTGTGACCTGTGAGGCCACCCAGGGCTCTCAGACTCCGctctcagagacactgaggagagaCCAGTGTTCCCAGTCCTGACCTGACTCACTGGGACTCTGCTACTGGTTTCACTCTGATACTGATCTCAGTCTGCTCTCTgcaactccctctctctctctctctctctctctctctctgtttatctcTTTCCCTCACTCACTGTCTAATTACATGTTTCATTGATAAAGTGTGTTGCATGTTTCAATTTTGATTTTAACACAATAAAGTACTTTTCATCAAA

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323106 lncRNA downstream 31195 248799 ~ 287736 (-) True G237746
TU323028 lncRNA downstream 37849 215535 ~ 281082 (-) False G237710
TU323020 lncRNA downstream 37849 242110 ~ 281082 (-) False G237710
TU323086 lncRNA downstream 43389 183399 ~ 275542 (-) True G237728
XR_005638641.1 lncRNA downstream 47297 271260 ~ 271634 (-) False LOC120555178
TU323005 lncRNA upstream 23355 344046 ~ 352449 (-) False G237710
TU323006 lncRNA upstream 59113 379804 ~ 381763 (-) False G237710
TU323080 lncRNA upstream 69010 389701 ~ 438619 (-) True G237722
TU323038 lncRNA upstream 123336 444027 ~ 573859 (-) False G237710
TU323053 lncRNA upstream 123336 444027 ~ 515943 (-) False G237710
TU322998 other downstream 37849 36391 ~ 281082 (-) False G237710
TU323047 other downstream 37849 156386 ~ 281082 (-) False G237710
TU323041 other downstream 37849 245310 ~ 281082 (-) False G237710
TU323000 other downstream 37849 258526 ~ 281082 (-) False G237710
TU323004 other downstream 37849 267755 ~ 281082 (-) False G237710
TU322967 other upstream 8352 329043 ~ 330534 (-) False G237710
TU322962 other upstream 23355 344046 ~ 345644 (-) False G237710
unassigned_transcript_1738 other upstream 23447 344138 ~ 345592 (-) True LOC120555161
unassigned_transcript_1742 other upstream 44708 365399 ~ 365881 (-) True LOC120555105
TU322989 other upstream 59113 379804 ~ 393212 (-) False G237710

Expression Profile