RNA id: unassigned_transcript_1743



Basic Information


Item Value
RNA id unassigned_transcript_1743
length 402
RNA type V_gene_segment
GC content 0.47
exon number 2
gene id LOC120555123
representative True

Chromosome Information


Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 367324 ~ 367832 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atgactttgatctccgtcctcatctggactctcctctgctgctgcttcacagagtccagaggccaggtcacagtgactcagcctggagcagtgagctctgctctgggaggctccgtctccatcagctgtaggatCAGTCAGAATGTTTATGTTTGGAGCAGCTACAAAGGTTTAGCctggtaccaacagagagatggagaaactcctAAACTGTTCATTTATAGTATTAGCTCTCGACAATCAGGGATTCCAGatcgttttacaggcagtggatcaaactctgacttcactctgaccatcagtggagtccagactgaagatgcagcagtttactactgtcagagtTATCATGAAATCAACAGTCAgtatgtgttcacacagtgaaaaagcgtcgtacaaaaa

Function


GO: NA

KEGG:

id description
ko04145 Phagosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322858 lncRNA upstream 50545 262995 ~ 316779 (+) True G237624
TU322857 lncRNA upstream 61112 275032 ~ 306212 (+) False G237624
TU322833 lncRNA upstream 87117 245238 ~ 280207 (+) False G237623
TU322838 lncRNA upstream 108079 245238 ~ 259245 (+) False G237623
TU322884 lncRNA upstream 118061 243574 ~ 249263 (+) True G237641
TU322895 lncRNA downstream 10602 378434 ~ 378954 (+) False LOC120555106
TU322871 lncRNA downstream 26123 393955 ~ 394462 (+) True G237631
TU322878 lncRNA downstream 52065 419897 ~ 420275 (+) True G237637
TU322943 lncRNA downstream 75036 442868 ~ 448687 (+) True G237696
TU322828 lncRNA downstream 96461 464293 ~ 484541 (+) False G237623
unassigned_transcript_1741 other upstream 2961 363742 ~ 364363 (+) True LOC120555138
unassigned_transcript_1740 other upstream 12655 354197 ~ 354669 (+) True LOC120555104
unassigned_transcript_1739 other upstream 20556 346296 ~ 346768 (+) True LOC120555103
unassigned_transcript_1737 other upstream 35654 331189 ~ 331670 (+) True LOC120555114
unassigned_transcript_1736 other upstream 39690 326926 ~ 327634 (+) True LOC120555153
unassigned_transcript_1744 other downstream 8699 376531 ~ 379047 (+) True LOC120555106
unassigned_transcript_1745 other downstream 21928 389760 ~ 390250 (+) True LOC120555107
unassigned_transcript_1748 other downstream 40260 408092 ~ 408573 (+) True LOC120555108
unassigned_transcript_1749 other downstream 56560 424392 ~ 424873 (+) True LOC120555110
unassigned_transcript_1750 other downstream 83189 451021 ~ 451936 (+) True LOC120555146

Expression Profile