RNA id: unassigned_transcript_1746


Basic Information

Item Value
RNA id unassigned_transcript_1746
length 632
RNA type C_gene_segment
GC content 0.55
exon number 2
gene id LOC120555169
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 391677 ~ 393137 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgtacggcggctcaatgactttgtatcactgtggtacACGTTCggtggaggaaccagactgaATGTTAACTtGGGTCGAGCCGGCCCCACCCTGACGGTGCTGCCCCCCTCCAGGGAGGAGCTGCTGAAGGGGAAGGCCACGCTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAGTCTGGCCTGGAAGGtggacggcagcagcagcagcagctgggaggagagcaggagcCCCGGGGTGCTGGGGAAGGACGGCAAATACAGCTGGAGCAGCACCCTGAGGCTCCCTGCAGACCAGTGGGAGAAGGTGGGCTCTGTGACCTGTGAGGCCACCCAGGGCTCCCAGGCTCCActctcagagacactgaggagagaCCAGTGTTCCCAGTCCTGACCTGACTCACTGGGACTCTGCTACTGGTTTCACTCTGATACTGATCTcagtctgctctctgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctacagatTCATCACAATTTGAAAGTTCATCTTGTGTTGCTTGCAGTAATGCTGATATTCTCTGTATGTtaaaacaataaagacaaatgtaTCAACTTAA

Function

GO: NA

KEGG:

id description
ko04662 B cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323006 lncRNA downstream 9914 379804 ~ 381763 (-) False G237710
TU323005 lncRNA downstream 39228 344046 ~ 352449 (-) False G237710
TU323106 lncRNA downstream 103941 248799 ~ 287736 (-) True G237746
TU323028 lncRNA downstream 110595 215535 ~ 281082 (-) False G237710
TU323020 lncRNA downstream 110595 242110 ~ 281082 (-) False G237710
TU323038 lncRNA upstream 50890 444027 ~ 573859 (-) False G237710
TU323053 lncRNA upstream 50890 444027 ~ 515943 (-) False G237710
TU323117 lncRNA upstream 69436 462573 ~ 559468 (-) True G237755
TU323001 lncRNA upstream 71153 464290 ~ 573859 (-) False G237710
TU323046 lncRNA upstream 90478 483615 ~ 544002 (-) False G237710
TU322972 other downstream 9914 245310 ~ 381763 (-) False G237710
TU322993 other downstream 24919 318928 ~ 366758 (-) False G237710
unassigned_transcript_1742 other downstream 25796 365399 ~ 365881 (-) True LOC120555105
TU322992 other downstream 45963 245310 ~ 345714 (-) False G237710
TU322962 other downstream 46033 344046 ~ 345644 (-) False G237710
TU322991 other upstream 12750 405887 ~ 454641 (-) False G237710
unassigned_transcript_1747 other upstream 12762 405899 ~ 407410 (-) True LOC120555171
TU322974 other upstream 60100 453237 ~ 466306 (-) False G237710
TU322975 other upstream 60100 453237 ~ 454979 (-) False G237710
TU323030 other upstream 60100 453237 ~ 454979 (-) False G237710

Expression Profile