RNA id: unassigned_transcript_1748


Basic Information

Item Value
RNA id unassigned_transcript_1748
length 375
RNA type V_gene_segment
GC content 0.49
exon number 2
gene id LOC120555108
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 408092 ~ 408573 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgactttgatctccgtcctcatctggactctcctctgctgctgcttcacagagtccagaggccaggtcacagtgactcagcctggagcagtgagctctgctctgggaggctccgtctccatcagctgtaggaccagTCAGGATGTTTATGCTTCTGACACTTTAGCctggtaccaacagagagatggagaaactcctAAACTGCTCATTTACGCTGCTACTTATCGACCATCAGGGATTCCAGatcgttttacaggcagtggatcaaactctgacttcactctgaccatcagtggagtccagactgaagatgcagcagtttactactgtcagagtTATCATGAAATCAACAGTCAGGatgtgttcacacagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322871 lncRNA upstream 13630 393955 ~ 394462 (+) True G237631
TU322895 lncRNA upstream 29138 378434 ~ 378954 (+) False LOC120555106
TU322858 lncRNA upstream 91313 262995 ~ 316779 (+) True G237624
TU322857 lncRNA upstream 101880 275032 ~ 306212 (+) False G237624
TU322833 lncRNA upstream 127885 245238 ~ 280207 (+) False G237623
TU322878 lncRNA downstream 11324 419897 ~ 420275 (+) True G237637
TU322943 lncRNA downstream 34295 442868 ~ 448687 (+) True G237696
TU322828 lncRNA downstream 55720 464293 ~ 484541 (+) False G237623
TU322834 lncRNA downstream 55720 464293 ~ 484143 (+) False G237623
TU322809 lncRNA downstream 71794 480367 ~ 534717 (+) False G237621
unassigned_transcript_1745 other upstream 17842 389760 ~ 390250 (+) True LOC120555107
unassigned_transcript_1744 other upstream 29045 376531 ~ 379047 (+) True LOC120555106
unassigned_transcript_1743 other upstream 40260 367324 ~ 367832 (+) True LOC120555123
unassigned_transcript_1741 other upstream 43729 363742 ~ 364363 (+) True LOC120555138
unassigned_transcript_1740 other upstream 53423 354197 ~ 354669 (+) True LOC120555104
unassigned_transcript_1749 other downstream 15819 424392 ~ 424873 (+) True LOC120555110
unassigned_transcript_1750 other downstream 42448 451021 ~ 451936 (+) True LOC120555146
TU322887 other downstream 73662 482235 ~ 482852 (+) False LOC120555140
unassigned_transcript_1752 other downstream 73670 482243 ~ 482862 (+) True LOC120555140
unassigned_transcript_1753 other downstream 103645 512218 ~ 512887 (+) True LOC120555141

Expression Profile