RNA id: TU33522


Basic Information

Item Value
RNA id TU33522
length 4047
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G24918
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1165649 ~ 1169695 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCAGTTGTGTCTGCGAGTTCTTGCCAAGATGGGAAATGACCACCAGCTGCCGCTTGACTTATTATACAGACCTTAGCTGAGAGCAACAAATCTTCACCTTCCCTGCTCTCTTGACTCATTTAATATTCCAGTCTCTGAGTCTCTGACTGGTGTACTTTCCCATCCTGGTCTTAGCTCGGGGCACTGTAATAGGGGTTTGAGATCACTTCAGGCTTCTGGATGTccctttttgtgttgttgtgccTCAGAAACCATATGATCATGTGTCTTCCACATACTGTTTTCATATCGACGCTTCAATTCGTTTGCACAAAAGTCTTCAGATGGGAATTGGAAGAGTTCATTTCTGGAACACTTGTATATGTAGGAAGAAAATACAACCTGGTCTTATTTTATGATTCAGTGTTCTCAAGTTAGCTGTTGTACTGAAATAGTTTTAATTCTCTGCCTTCAATTCAATATTCTTCAGCCATATTCATCACCTTTCAAGTACAAAATACGAATATTGGTTAAATTGGGAGCTATTATTTTACTTGACTGCAGAGCTAAGCTCTAACATGGTGGTAATAACAGATACATGTCTTTTCTCCCAGCACACATCTTCCTCTAGAACTCTTCACTCAGCATCAGTCATTACAGATGAAGTGTGACACTGACATTAGACAGGAAAGGGCAGCTCGTGGGCTGCCTTATGCACCATAGCCATTTCAGTAAGAAACTGTAAAAATAGAAAAGTAATATTGTTCTGCTCAGAATGGATTTAATGTGGTAACTATTTGAGTGGTGTACATCTCTACCGCTGTAGAGATTAGAGCACAGccagcagtgttatttatgTGTCTGTATCAACCATAAGAACCACGTTCCGTTCCATTTTTAATGATGTGATTTGTGTCAGAGCATATTCATATTGATGTGTATGAATCTTCAGCCCCTCAGAATGTTTCATTTCTTTTGGTTTCTTTTCTTGTCTTAAGTGCTTCTGTTTTGCTCAGATTTTGGTTCCATATCTTTTTCTGCATGCTAACCGGTCTGAAGCGACAAATCCCCTGCCTTAACGTGGCCTTCAACCTGGAGCCAGACTGGTTTTTAGCAGAACCAGTCCCAGCTCTCTAACTAAACCCATCACTGTTGTActataaaatgtaatgtaatctattATTTAACAGGACCATTCCAAACCCATTTGAAACCTTTCTGGTTTACTATTttaaaaagacagagaaatatCCCCCTTTTTTACTGGACTAACTTTATCTTCTGAGGTAGGTCATTTGGCTGCTGTCACACCTCCAGTCAAAAAAGGCCTGACTTCCACACAGGGAATTTTATATACCACTATTAAATCATCAGTGAATTTACAACCCACCAGTGCCCTACCTGGGATCATTACAGCACCACATCTGCTCTGATCAGTGGATCAGAGCAGAtgtgaaaaaagaaatgtaccTGCAGAAAAGTAGTTagcttgaattttttttttttttttatttgccagGTACTACAACATATTTTCCTACCTTGGTAGTGAGTCTTCACCTTTTTTACTACCTCTTTCTCGCCTGTCCACAGTGTTCGGCCGACTTCTTCCCTGAGGCCTTTTTTCGCTGCCAAAGGCCCGTTTTCACCTGGTATTAAAACCTGATCTGAGTGGACTGCTTTATGTACAGGTAAAACCACTCTCAGGGCGCATTGCGATCCATTAACTCAGACCACATTCGGAGGTGGCTTAGGCCACATGTGACCTCAGTCCTGTAGCAGTGTGTACGCGTCAGTGTCCTGGTCCACATTAAGGAATGCCTGCTTAACTGTGAGCGAACGTATGTACTCATTCAAAGTAATTATTgtgtcacagaaaccactgagacTGAATTGTGAGTTTTGGATGTTATCATACTGTAGGGTGAGCAGATTTCCCagaactaaaaccgggacactttgcgcgtgaccgtagtgctcgtgtACGCACAcactttttaacgtgaacatgtgccagctcaggacagacacagacagattagagACAATTTTGCCAATAGCAACAACATTATGGGGTATctcagttaatattcatgaattttcttggtatgtagcctacatatctaagaaataatattaaaagacattgaGTTTCGTGTGGGaccaatttatttttcaaaattaaagcattcttttggaaaatccacccactgaacttgtgaaaaacttagtgaaaaggtatttttcattgcatggcacTAAACTTATTTGGAACCGCTGCCACAGGCATTTATCCGTGTTTTAAGACCCCAACGTCACTAGgattaggttatggttatggttatggttaaggttaggtgtcTTGAAGTCAGCGgtcacagcgctgcctggaaggagacgttgggggcttaaaacaccatggagcgccacaggcttgaactaaagttatggaaacactttacagtaagggtacatgaattatgaattcatgcatgaattaatttatgatttgtgcattacttcaTTCCTTTACATCTTctgaatcatcaggaattgacatgaGTTCCTAGCCTCTCATTCATGACCTCATGTATGAACAACACATcaactaaagcattaggtaAGGTGGGGACATCATTTTGCACAAGTTGTGTTCAAATCAGAATTTGTGCAGTGATATCACATTATTTTGCAGAAAAATCATGATCATGCTTAATAAATCATAATTCATAATGATGTGCCCAAGtacctaatgctttagttgTGTTGTTCATGTATGAGGTCACAAACGACAGACTATGAACAagtcaattcctgatgattcatggGATATTAAGGAATGCAGCAATACATAAATCATTAATTacataatgcataataatacatgtctcaattaattcatgcatgaattcatgataattcatgtacccttaccgTTAAGTGTTACCAGTGTTATTCTAACaaacagcgcgcgcacacacacaaatgtcctCTCATTTGATAGAGCAGATAGCTTCCCTGTTGGAAACCTTCATTCTGTGTATTTGTTAGAGGAGTGAATCCAAACTGGGACGTCTGATCACCCATCATACTGTCGCTGATGTGATGCTGGTTTTGTTCCTGTGCTGCTTGCTCTTATATCCCCAGCTGTCTGGAGATCTGTGGCAGCAGGGCATATAGCTAATGCTATATAGAGCATATAGCTAACCCTATATAGAGCAGGAAAGTTGGATCCGATCACAGGTGCTCACTTGGGACACATACTGAAAGCAGTCCACCTGTGATCGGATCTCTCAGATTGGATTTTAATTAATACCAGGTGAAAACGGGGCCAAAGAGTTGTAACCTGTCTCACTGCTGAACTGGCTGCAACCAGTTCCCTTTCTGTGTGTTCTGAAATATTCGAATAAGCCTCACAAACAAGCAATACCTGGCTGTCAGGTGATGCGATGCAGCCTTGTtgcagtttgttttgttgtagttttttgGCAATGACAGATTATGTCAACAGCGGGGTTCCAGGAAAACTTTCAAACACAACTTCTCCTCTTGGTGCATTTCAGAGGCAGTTGGTATCAACGTAATGTTGCATTAAAATTTCTTAGGTACCAGCAGCCATATTGACTGAGCGGTGTAATAATGGAAGGCTAATAGGAGCTTAAGGAGAGGGCTTGGTGCTTGCTAAGTCAGGGTGTTTTAATAGAACCATGTTACTCCTGCAGAAAAGCCCCTCCAGTCCCTGTAAGCGTTGACACATTCAGCTGAAGAAAAGGTAGAATAATAGGACATGAGTTTAATGTGGCCTCGGCCCGGTCAACATTATTACTAGATCATCCTAACTAATCATCAATCATCAATTGTTTGTTGCTACTGTTGATTCTGTGGAACGGGTTTGCCTTGATGtgtcatgtgtatgtgtgagtgcacCATTGGAGTGGTtgttctatgtatgtatgtatgtatgtatgtgtatatatgcgCATATTAAGACTTATAAAAAGACAAATCTGAGCACAAGTTTGGGTTTTGAttaatttaattgttttatgCAATTCTATGCTGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33530 lncRNA upstream 31047 1134061 ~ 1134602 (+) True G24923
TU33490 lncRNA upstream 218589 946797 ~ 947060 (+) True G24890
TU33465 lncRNA upstream 390951 766014 ~ 774698 (+) True LOC120555975
TU33464 lncRNA upstream 390951 773431 ~ 774698 (+) False LOC120555975
XR_005638779.1 lncRNA upstream 391094 773435 ~ 774555 (+) False LOC120555975
TU33526 lncRNA downstream 5631 1175326 ~ 1178181 (+) True G24920
TU33533 lncRNA downstream 15030 1184725 ~ 1185227 (+) True G24926
TU33594 lncRNA downstream 83502 1253197 ~ 1254591 (+) True G24972
TU33606 lncRNA downstream 88824 1258519 ~ 1258816 (+) True G24984
TU33613 lncRNA downstream 133024 1302719 ~ 1302952 (+) True G24991
XM_039794250.1 mRNA upstream 2631 1103597 ~ 1163018 (+) False kif13ba
XM_039794249.1 mRNA upstream 2631 1103622 ~ 1163018 (+) False kif13ba
XM_039794252.1 mRNA upstream 2631 1103634 ~ 1163018 (+) False kif13ba
XM_039794257.1 mRNA upstream 2631 1103714 ~ 1163018 (+) False kif13ba
XM_039794248.1 mRNA upstream 2631 1103715 ~ 1163018 (+) True kif13ba
XM_039793897.1 mRNA downstream 34799 1204494 ~ 1227658 (+) True eprs1
XM_039793904.1 mRNA downstream 34799 1204494 ~ 1227658 (+) False eprs1
XM_039793907.1 mRNA downstream 58722 1228417 ~ 1240457 (+) True glo1
XM_039793914.1 mRNA downstream 77190 1246885 ~ 1251901 (+) True LOC120555232
XM_039794041.1 mRNA downstream 93255 1262950 ~ 1269003 (+) True LOC120555381
TU33826 other downstream 669638 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 912263 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2615238 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3400678 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4864514 6034209 ~ 6035193 (+) True G25708

Expression Profile