RNA id: TU33530


Basic Information

Item Value
RNA id TU33530
length 342
lncRNA type intronic
GC content 0.58
exon number 2
gene id G24923
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1134061 ~ 1134602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctggctgtgtgaaagacggtaccgtacgctggctggctgtgtgaaagacggtaccgttcgctggctgtgtgaaagacggtaccgttcgctggctgtgtgaaagacggtaccgttcgctggctgtgtgaaagacggtaccgtacgctggctgtgtgaaagacggtacGTATGCTGGCTGTGTGACAGACGGTAcgtacgctggctgtgtgaaagacggtacgtacgctggctgtgtgaaagacggtaccgtacgctggctggctgtgtgaaagacggtaccgtacgctggctggctgtgtgaaagacggtaccgttcgctggctgtgtgaaagacggtaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33490 lncRNA upstream 187001 946797 ~ 947060 (+) True G24890
TU33465 lncRNA upstream 359363 766014 ~ 774698 (+) True LOC120555975
TU33464 lncRNA upstream 359363 773431 ~ 774698 (+) False LOC120555975
XR_005638779.1 lncRNA upstream 359506 773435 ~ 774555 (+) False LOC120555975
TU33462 lncRNA upstream 367771 765198 ~ 766290 (+) False LOC120555975
TU33522 lncRNA downstream 31047 1165649 ~ 1169695 (+) True G24918
TU33526 lncRNA downstream 40724 1175326 ~ 1178181 (+) True G24920
TU33533 lncRNA downstream 50123 1184725 ~ 1185227 (+) True G24926
TU33594 lncRNA downstream 118595 1253197 ~ 1254591 (+) True G24972
TU33606 lncRNA downstream 123917 1258519 ~ 1258816 (+) True G24984
XM_039794679.1 mRNA upstream 96568 1030354 ~ 1037493 (+) True mrps11
XM_039795949.1 mRNA upstream 663331 355665 ~ 470730 (+) False LOC120556381
XM_039793897.1 mRNA downstream 69892 1204494 ~ 1227658 (+) True eprs1
XM_039793904.1 mRNA downstream 69892 1204494 ~ 1227658 (+) False eprs1
XM_039793907.1 mRNA downstream 93815 1228417 ~ 1240457 (+) True glo1
XM_039793914.1 mRNA downstream 112283 1246885 ~ 1251901 (+) True LOC120555232
XM_039794041.1 mRNA downstream 128348 1262950 ~ 1269003 (+) True LOC120555381
TU33826 other downstream 704731 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 947356 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2650331 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3435771 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4899607 6034209 ~ 6035193 (+) True G25708

Expression Profile