RNA id: TU33600


Basic Information

Item Value
RNA id TU33600
length 1907
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G24978
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1252718 ~ 1254624 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccgattaagacaaaAACATGGGCAACGTTCGAAACAATTGCACAGCcattttaatgtacacatttCCATAGATACACATAGCTTAGCCTCTATAATGATTGACAGGTGGGAGTGTAGCTACACCCTAAAGCATGCCCTGCTTTATCGTTAatacatttacaaaatgaacatcatgctgtattgaagatgCACAGATCTACCAAGACTAATGCTGTGTCTCAATTCAGATACTTCCAAGAGTACACTTACATGCGTACGCTATGTACTCACTTGTGTTGTGCACAAATTTGGACAGGGTAGTGTTGTCTCAAATCCCCCACAGCCGTTATGCACTGACCAGCAATGACTCTTCTTTTTAATGGTAAATTGCAGCCGACTTCACGAGTCACTTCATGGCAGAAATACACAGCTGGAGACAGCTGGTTGAACTTTTGTTGTAATAATCAAGGTGAAATCTGCTCCTGACCACTACCCTCACTTCCCCCCATACACCAGCTCTGGGTGTGTGACTTGTCCTGTGAGTCATTTTGTTGGATACCTTTGATAGTATCCCAGCATGGGTCAGCCTCTGATTACAATAAACAGGTGATATTCAGCGATGTCCATTACAAGGATTCATCAGTTTAACAGACTGGAGGACAATCCAATACATTGAAATCTCTGTTGATTGTGCTCCTCTTGCTATCACatgagagatgatgatgatgaggtcaCTAAGGTCACTGTGAAAGTCTTCTACATCACTTGTACTAAGGTGTGAATGGTTATAAAACCACTTTGGGATATCTGGACTCTATTGTAAGTATCTGATTGCAGAACTGGTGAAGCCTCTCACATGAGATGATGCTTTAACTCGTGTGCTACACAGGTTTAAGGTGACATCTGATATAGCATTCCAATTTAGAAgtacattttgagtgttttcaTACTTACAGTAAATGTACAGCATGGTGCAGTTTAAGTCAAATTCCAAAATCCAGAATACTACTTTGACACCAGTGGATTTAATATACTACATACATGAAAAGGAAATGTAGGGACTGAAGGGACTGTAGGGCTGACACTATTCACTGTGACATGTCTGAcaaataatacatacacataatgaTAACAGGCGTattcataaaaataaagaatccAATTATAATTTTGGTATTGTATGCTATAATTCTGACAAACAAATAACACTATTGCAGATATCTGCAACATAGTAGGTAACTGAATGCTCCCTTAAACTTGTTAAGAGTACCCTCTAGTTTTGTGCGTGTGCCTCCTTGGAGACTCAGGGACCTCAGAAAACCTGTGTAGTGATAGTCACAGAAGGCATGTAGCCCACTTGTACTGTCTTGAATATCCACTTTCTCTCATATTTATTATTtcgttgtgtatgtatgtatgtttattttttttatatatattttgttttattattttttttttttttttttgcaccggCAGCTTGTTGGGGATGGGTGGgggagaaaataagaaaaagtaTGTATGTTGAATATCTGTGTCCAATACTCATTTtctcaaataaaaacatgttaaaaaaaaaagagtacccTCTAGTGGCAAACAAAATCATACAGGGAGCTATTTGACATTGGAGAGACATTCTCAAGTAGACTGACCTGATATCAGTCCCAAATTGattgacatattttttttaatttgacaaCTAAAAATGATTATGATGAATTGTTTATGATAAATGTAAAGGTTTGATTACATCTGCAATGTTTCTAAAGATCTCTCGCGCAATGTTTGCATTCTCTCAAGAGAATTTAGGGAGGAAAGTTTAACTCAAAGGCCAACGTATTTCTGAGAGACAACAATGTAGCAGTCAATTTGAGCTTGAGTTGTTATTCGAGCTTGGCCCAAGCTCAAGTACAAAGAAATCAG

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33596 lncRNA downstream 10015 1240767 ~ 1242703 (-) True G24974
TU33574 lncRNA downstream 35788 1216526 ~ 1216930 (-) True G24955
TU33572 lncRNA downstream 43259 1208558 ~ 1209459 (-) True G24954
TU33553 lncRNA downstream 78164 1171389 ~ 1174554 (-) True G24941
TU33554 lncRNA downstream 82959 1165662 ~ 1169759 (-) True G24942
TU33609 lncRNA upstream 12062 1266686 ~ 1266960 (-) True G24987
TU33610 lncRNA upstream 23945 1278569 ~ 1278817 (-) True G24988
TU33671 lncRNA upstream 203413 1458037 ~ 1458542 (-) True G25039
TU33736 lncRNA upstream 255541 1510165 ~ 1513612 (-) False LOC120556048
TU33754 lncRNA upstream 405870 1660494 ~ 1660735 (-) True G25110
XM_039793885.1 mRNA downstream 49636 1193040 ~ 1203082 (-) False tdp1
XM_039793880.1 mRNA downstream 49636 1193040 ~ 1203082 (-) True tdp1
XM_039795957.1 mRNA downstream 61832 1176462 ~ 1190886 (-) False LOC120556384
XM_039795079.1 mRNA upstream 156050 1410674 ~ 1457108 (-) True LOC120555898
XM_039794469.1 mRNA upstream 204540 1459164 ~ 1507908 (-) True LOC120555617
XM_039794471.1 mRNA upstream 204540 1459164 ~ 1507889 (-) False LOC120555617
XM_039794470.1 mRNA upstream 204540 1459164 ~ 1489349 (-) False LOC120555617
XM_039795403.1 mRNA upstream 256869 1511493 ~ 1555646 (-) True LOC120556048
TU33668 other upstream 177344 1431968 ~ 1457091 (-) False LOC120555898
TU33669 other upstream 177344 1431968 ~ 1456472 (-) False LOC120555898
XR_005638786.1 other upstream 334262 1588886 ~ 1642348 (-) False LOC120556047
unassigned_transcript_137 other upstream 578697 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 1020851 2275475 ~ 2277091 (-) True G25228

Expression Profile