RNA id: TU33610


Basic Information

Item Value
RNA id TU33610
length 249
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G24988
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1278569 ~ 1278817 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgctggagttaccgttattatttttcacgtgatcaataccgaattcaatctaattggatgggaatatactgtaggctacgttgcatgtaacgcaccactacaagacgactcgacagattcggccgcattctgcattcatttgcggcaaataattgcagcttgatggcggtaacgttagcacatagtagtatggacggcgacatgattgaaaatgaagaaaacagagatcccagagattaggcagacaag

Function

GO: NA

KEGG:

id description
ko04136 Autophagy - other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33609 lncRNA downstream 11609 1266686 ~ 1266960 (-) True G24987
TU33600 lncRNA downstream 23945 1252718 ~ 1254624 (-) True G24978
TU33596 lncRNA downstream 35866 1240767 ~ 1242703 (-) True G24974
TU33574 lncRNA downstream 61639 1216526 ~ 1216930 (-) True G24955
TU33572 lncRNA downstream 69110 1208558 ~ 1209459 (-) True G24954
TU33671 lncRNA upstream 179220 1458037 ~ 1458542 (-) True G25039
TU33736 lncRNA upstream 231348 1510165 ~ 1513612 (-) False LOC120556048
TU33754 lncRNA upstream 381677 1660494 ~ 1660735 (-) True G25110
TU33755 lncRNA upstream 382015 1660832 ~ 1661353 (-) True G25111
TU33756 lncRNA upstream 382542 1661359 ~ 1661697 (-) True G25112
XM_039793885.1 mRNA downstream 75487 1193040 ~ 1203082 (-) False tdp1
XM_039793880.1 mRNA downstream 75487 1193040 ~ 1203082 (-) True tdp1
XM_039795957.1 mRNA downstream 87683 1176462 ~ 1190886 (-) False LOC120556384
XM_039795079.1 mRNA upstream 131857 1410674 ~ 1457108 (-) True LOC120555898
XM_039794469.1 mRNA upstream 180347 1459164 ~ 1507908 (-) True LOC120555617
XM_039794471.1 mRNA upstream 180347 1459164 ~ 1507889 (-) False LOC120555617
XM_039794470.1 mRNA upstream 180347 1459164 ~ 1489349 (-) False LOC120555617
XM_039795403.1 mRNA upstream 232676 1511493 ~ 1555646 (-) True LOC120556048
TU33668 other upstream 153151 1431968 ~ 1457091 (-) False LOC120555898
TU33669 other upstream 153151 1431968 ~ 1456472 (-) False LOC120555898
XR_005638786.1 other upstream 310069 1588886 ~ 1642348 (-) False LOC120556047
unassigned_transcript_137 other upstream 554504 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 996658 2275475 ~ 2277091 (-) True G25228

Expression Profile