RNA id: TU33634


Basic Information

Item Value
RNA id TU33634
length 2381
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G25008
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1413095 ~ 1415747 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGCTAAAACAAAGGCAAACAGATATATTCAAATTTGTTTATTAGgataaaccccttgagatgtatcatCTCGTTTTAGAGACATTTATGAACAGTGTTTGAGACTTACCCCATATTAAAACCACGTAGCGAACAGGGATGTAGTATGTAAGGATTGTTGCAGTGACAAAGACCAGGAAAGCCAGGCTGGACAGGAACGGCACCGACCAGTTGAAAGTGCTGATTTTTAATCCTCTCCCCAAAACATGCGATGCTATCCAGAAGGTTTTGAAGGGTGATGATGGTTTCTTGGACCATGTGGATTTTCTCCATCAGCCCTCTTCTCTCAGACTCCTGCagcagaacaaaacaaacaagtcTTCGTACAGTCCACAACAGAAAGGTGGGAAGGGAGGGTTACCTTCTCGCTTTGCTATTTTAGTATGAGATTGTTGGGGCATTTTATTGAGAGGGAAGTAGATCATTTTCAGCAGCTAATTGTAGTAGAATTTCAAAAGaagtacacatttaaaacataaaggACTGTGCCTTTATCAATCTAGTTAAAGGTTTGTGCTGGTTGAAAAAGATAGTTGCTATAACAACTAGTGACAGACTGTCACTAGTTGTTATAGCAACTATCTTTTTCAGCTCATTAAATTACTCTTGAAAAGTACCATCAGTACAAATACCACATATTAAATATGTGAATTTAAAAAGGAGGTAAAACTCcaatacaagtaaaaaaaaatgttgttttacTTTTGTTACTTTACATCAAATAGTCGTATTACAGAGATGTTttgctgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccccctTGTAAATGAGATAATGCATCACAAAATACTTCctgaaacaataaaaataaataaaaaaggttaaagtattatttattatagCAGATAATTTCAACTATTCTGAAGTAGATCATATCTGATTATCATAAATATCGCAATTTTAATTTGGTTTGTAGcctaaaaagcaaaaacataaaatacagcACTTTAATGCTGTAATTTAACAGCTCAACTACACAATAAGCTTTGACAGCTTTATCGGGTCTAATATTCTGAGACTGTCACAAGGCCACAGATTTCCTTCCTACCagacttaataataataataatgataataataatgataataataataataataataataataataataataataataataataatgtctttCCAAGGGTCTTTGAGAAAGACACAGACTCATTCAACGCCACTCTAGATAAGAGTGTCTGAAACTTTAACAGCAAATTTAAAAACGGCTTTTTGAAGTGAATGCTCTTCAGAGTTATGAAAGAGACGAGGCACCGTTCTCAGGCTAGTCCAGATCCCAGGAGGGAAGGATGGCTTCAAAGTAAACAGAGGAGACCAGACCCTCTGAAGATCTCTGCAGAGAGAGCCAGACTTCAGACAGAGACACGGCCACATGTATACATCAAACACAGCGAGACTGAAGGAGGGTTACAGGACTGAAGAGAGAGGCTGGGgtcggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacttagTGATATATGTTTGCTTCTGCTCAGAAACACTGTGAGGGATTGCTGGCTCAAAGCCATCCAGACGCTGGGGACGAGCCTGGGAAAGGAGCTGTGGAGGGGATGGAACCTGGGGTATTCCACATGCACAGTGACTACCAGTCTCACAAACCACATCTTGTAGGATCATTTACTTTCACCTCAGTCAAATATCCATCAAACCTCCTCACTGCCCTGAACCACTTCAGTTGTTTCAGGGTCATGTTCCCACTGAAACCAGCATGAGAACCACTTTACACCAGGCCGACGCCGGCCATTCAAAAGGTCTACAATAAACTGCTGTCGTTCTGAAGGAATATTTCATTGCCTAAAAGCATTGTAACACTTTCAATGCCAACTTTTAAAATGAGCTTTGAAAAAGCATGTCTAAGTGCTGTCATTAGTTTCATATTGATGGTATTATATGGCATGTTAAGCTCAGGGACTTTCCTAAATGCGGCAGAACCTTTTCCCCCACCCCtctattagcatatgaatatgTTGTGACATGTGGAAACGAGTCGGTGAGGTCTTCATTAAGCCCAAATGTCTTTTGGTAAGTttaccacacaaaaaaaatccaactcGTGGTTGGCAGGAATCCAAATGCATCGGAAGATTTCGTACTGAATGAAGAGCTTAACAGCATAACATCATAGATCATAGGCAGATACCTTTGTCAACATGTCAAAATAAACGTATTTACTATTCATCGCATATAAAAGATACAGATGCTTAGTTAACAAAGAAACGCAAACATAAGAAACACAGGTACGTACCTTTTCATCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33637 lncRNA upstream 26831 1386048 ~ 1386264 (+) True G25011
TU33613 lncRNA upstream 110143 1302719 ~ 1302952 (+) True G24991
TU33606 lncRNA upstream 154279 1258519 ~ 1258816 (+) True G24984
TU33594 lncRNA upstream 158504 1253197 ~ 1254591 (+) True G24972
TU33533 lncRNA upstream 227868 1184725 ~ 1185227 (+) True G24926
TU33792 lncRNA downstream 353535 1769282 ~ 1774440 (+) True G25144
TU33862 lncRNA downstream 767059 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA downstream 767059 2182806 ~ 2183770 (+) False G25203
TU33885 lncRNA downstream 799500 2215247 ~ 2215548 (+) True G25220
TU33890 lncRNA downstream 895857 2311604 ~ 2312082 (+) False adamts18
XM_039796055.1 mRNA upstream 28020 1378010 ~ 1385075 (+) True LOC120556440
XM_039796056.1 mRNA upstream 28020 1378010 ~ 1385075 (+) False LOC120556440
XM_039795697.1 mRNA upstream 48369 1312448 ~ 1364726 (+) True LOC120556244
XM_039794192.1 mRNA upstream 101335 1308822 ~ 1311760 (+) True LOC120555491
XM_039794042.1 mRNA upstream 144092 1262950 ~ 1269003 (+) False LOC120555381
XM_039795404.1 mRNA downstream 258994 1674741 ~ 1698359 (+) True zgc:165481
XM_039795363.1 mRNA downstream 374206 1789953 ~ 1817994 (+) True slc7a10a
XM_039794589.1 mRNA downstream 623716 2039463 ~ 2182754 (+) True phkb
XM_039794588.1 mRNA downstream 623717 2039464 ~ 2182754 (+) False phkb
XM_039794587.1 mRNA downstream 623717 2039464 ~ 2182754 (+) False phkb
TU33826 other downstream 423586 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 666211 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2369186 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3154626 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4618462 6034209 ~ 6035193 (+) True G25708

Expression Profile