RNA id: TU33756


Basic Information

Item Value
RNA id TU33756
length 339
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G25112
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1661359 ~ 1661697 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTGACTGCAGAGATACATTTGCGACACGGACATTATTTTCCGGAGTTGtttacgctgcgttgaagcgagctgtcccgtcACCGTTCCCCggggtcagagccagaaccagacggtaactgacaacatctgtgtcctgtcagtggCGACAGCAATGTGACCGAGCAACTGACACATGTTgagaattaatgtttagtcttgctacacgtaggctaatattacattttatcagcggtggaaagtaactatagccGTCGGTATACTACCGTCGGCTACtttgattcaattttaattgggtatttttcattttctcgtacttattaggctacttctagtccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33755 lncRNA downstream 6 1660832 ~ 1661353 (-) True G25111
TU33754 lncRNA downstream 624 1660494 ~ 1660735 (-) True G25110
TU33736 lncRNA downstream 147747 1510165 ~ 1513612 (-) False LOC120556048
TU33671 lncRNA downstream 202817 1458037 ~ 1458542 (-) True G25039
TU33610 lncRNA downstream 382542 1278569 ~ 1278817 (-) True G24988
TU33757 lncRNA upstream 31 1661728 ~ 1662486 (-) True G25113
TU33799 lncRNA upstream 71321 1733018 ~ 1740823 (-) False cep89
TU33921 lncRNA upstream 786730 2448427 ~ 2449619 (-) True G25246
TU33920 lncRNA upstream 787557 2449254 ~ 2449619 (-) False G25246
TU33931 lncRNA upstream 987531 2649228 ~ 2649449 (-) True G25256
XM_039795401.1 mRNA downstream 19020 1587544 ~ 1642339 (-) True LOC120556047
XM_039795403.1 mRNA downstream 105713 1511493 ~ 1555646 (-) True LOC120556048
XM_039794469.1 mRNA downstream 153451 1459164 ~ 1507908 (-) True LOC120555617
XM_039795088.1 mRNA upstream 3073 1664770 ~ 1740839 (-) True cep89
XM_039795405.1 mRNA upstream 82495 1744192 ~ 1774283 (-) False rhpn2
XM_039795406.1 mRNA upstream 82496 1744193 ~ 1774421 (-) True rhpn2
XM_039796022.1 mRNA upstream 156734 1818431 ~ 1831946 (-) True lrp3
XM_039796021.1 mRNA upstream 156734 1818431 ~ 1831876 (-) False lrp3
XR_005638786.1 other downstream 19011 1588886 ~ 1642348 (-) False LOC120556047
TU33668 other downstream 204268 1431968 ~ 1457091 (-) False LOC120555898
unassigned_transcript_137 other upstream 171624 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 613778 2275475 ~ 2277091 (-) True G25228
TU33896 other upstream 613778 2275475 ~ 2276009 (-) False G25228
XR_005638726.1 other upstream 4494525 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 4980749 6642446 ~ 6644606 (-) False dok4

Expression Profile