RNA id: XM_039795088.1


Basic Information

Item Value
RNA id XM_039795088.1
length 3255
RNA type mRNA
GC content 0.47
exon number 17
gene id cep89
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1664770 ~ 1740839 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGTGGTGAAGCGTCTAGATACGAGAAATCTGCACACAGCCAGCCTGTTGAATATAGCTAGTTAGCTCGCTTATTTGATCGTTTTAGGGTAAAAGAGGACATAGAATGTTAAACACATGGTAATGACATgtaattttaagcttttttaatGCCATTTGACTGAAAGAATACTCGGCAAACGAGCCAAGCTGTTCGCCTAAAAAGAGACATTAACTATAGCTAGTAATGCAAGGGTCACAAAACCTTTTTTCACTATGTTGAAATTCAGCTTCAGGAGGGAGAAAGACAAGGAGTTTAAGCATATAGCTCATGGTTTGATCCCTGCCGCCTCCATTGCTCCCAAGCCTGCTGTGCCTCGTACCCCGCCCCCACGCAGCCCAGACCCCTCACCTGAGAGACCCAGATCCGCCTTAGCAGCAGCCATCTTGTCTTCTTCGCTCACTGGACAGACATGGGCCATCCCCCCTGTCTGGCCAAGGTCTTTGTCTGAGAGTGGCCAATCAGAGTCCTTCATATCTGAACCAAACATCAGCACAGACATTTTCCTCAGAGATAGATGGTCAGAAGATTTGGCTAGCCGACCACGCCTGTCCTCCCCTGACCACTCAGAGGAGGAGTTAGAAGacaaggaagaagaggaggtggAGAGTGAAGAGGACAGGGAAGAACATGTTTACCAAACTCTGGACAGACCGGAGAATTGTTCAATCACAGAACCTGTCTATTCCCTGCCACTAAAAGCTAAGACCAGTACACCCCATCTGAATCAGATGTCTGGCAAAAGAGGGCCTTCTCCAGCCGCACTATCCATCCTAACCCCTGCCCAACCCAGCCAagccaaaaaacccaaacaCCCCACCCAGCTATCTCCAGAGCCCAGCAGGGCATGCAGTGAGGTGCAGAGGGACGTAGCGTGGGCCCTGCCAGAGAAGAACACAAGGATGGTAGATGAACAAAAGTTACTGGAGGAAAGACTGCAACGGCTTGAACAGGAGATCAGTCACAGCCAAGCCTCCTCAAACCTGAGGTCGTCTGCAGGCAGCCAGGCAGAGCTACTGAATTTGAGGCAACATGCTCAGGAGCTAGTGGATGAAAATGACGCCCTCAAATTGACAGTGCACCGTCTGAATGTGGAGCTGAGCCGCTACCAAACCCACTTCAGACCACTGTCCAAACAGGAGAGCTCCAGAATCAATGGCTTACCAAAGACGGGGTCTCCTCCTCCCTGGCTGCTTGACATGAAGTATTTATCTCCTTTGTTGCTGGCCTATGAAGACAGGATGAACGAGAAAGATGCACTTCTGCAAACCACTGAGGAAGAGGTGAAGAGGTTGCGTGTTCATGTAGAGGAGGTGATCAAAGAAAATGAGAGACTCCATGATGAAATCGCAAAGGTTGGAGGCATCAGCCAAAAGAGCTGtcATCAACTACAACAACAGGCCCTTCTGGTTTTGCAGGAGAACCAGGTCCTGATTGATCAGCTTGAGGCTCAGCATGTTAAGGCCAAGGCCAGCCACAACAGACACTATTCTGAAGTTTCCAAACTGTCTAAGCAACTGATGTTGTTAGAAGCGGAAAAGCAGCGTTTGCTGGAGGACCTGGAAGAGAGCAGGACGGAGGTGCAGAAAAATGGGAGGGAGTTACTAGTCCTGCAGGCCCGCCTGAAGGATGCCATCACCTGGGACGAACATTGCAATGTTTCTGGGAAACTCAGACGGCAACTGGAACAGCAGGAGAGTAGGAATAAGAGTGAGATGGACGAGTTGCTTCTCAGATTGTCCAGCCTGCAAGAGGAGAATAGGAATCTGGCTCTGGAAAAAGCCAACCTGACTGCTGATATAAGGAGAATGGAGGCTGAGCAGGAGCTTGCCAAACAAGCCAACAGGAAGGCTGAGAGGAGGATGAGTGTAttgaagagacagaaggaagAGTGTGTGCTGAAGGAGGAAAAGACTCGGCATTACATGGGAGCTGTCATTTCTGTGGCGGAGCACATTTCCCAGGAGAGAGACCAACTAATACAGATGGCTTCAGTTCTTCAGCAGGAAAAGCAGGGATTCGTCAGCAGGATTCTAAATGGCACAGTTCAATTCGGAAAACTACAGGAAGCAGTCAAAGTGTACCGAAAGCAGGCGTCAACCAGACTGGCAGTGTTGGAGGAGGCAGCAGAGGGGAGGACAGCTTCTTACCAGAGGGAGATTCTCCACCTGCAGAGGCTGCTAAGAGAAAGACAGGAGGCTGAGGAGAGACTGCTGCAGTCCAAACGGGAAGTAGAGGAAGAGTTGGAGGTGGTGTGGCAGGCGGCAACCAGGGAGAACCAGCAGATGAGGGAGACTCTTTTGGACTCAGGGCTCACTGTGGACCTCCACAGTCGGGCCGTTTCTGGCAGTGCCTCTCCTGGCTGGCTTTCTTAGGATTCAGATGACACCACGACCACAATCCCATCAGCATCTGGGCTCCAGAGAAGGTCCATAATTAAATCTGACTCAGATAACCAAAAGCAACTACTTGGACGAGAAGCATAAACTTGGGCTGGATTTCTATTGCTAAGCTCCTTATCCATAAACCATAGGTGTTTTAACTCATGATGGAAAGATAGACTGGGTACATTAGTTACAGTCCTAAACATGTCAGCATACAGGCATCTGCCAGATTGACTTTGTTACACAGATAAAACCTTAAACTTGCGCCATCCTCTGTAACAAACTCATATTTGAATTTAACTTTAAGCATGTCTCGTTTGTACAACGAAGGGGAGGCAATAGTAGTCTGGGTAATTTCACTTCTTACTTTTTTCCTGTAAGGGGAACTTGGTTTGGACAAAGGGATTTCagtaaaacatataaaacattggagtgaaaaaaatcataataaaacAGCTGACTTTATAACAGCTCAGTTTTGACAGTGTGGCCAAATATACCTGACATCAGTCTGGGTAGTCAGAAAGACTGCACTTTTTATAAAGATTTATAaaagattgttttatttatttatctttttaaattCGTCTCAGGGTTTTATAGACCATGCCAAGTATAAAATATGAACAAGTATACCAAATAGTGGAGAAAGTTGCATTATTTAGCTTGATTAAGACTATTATCCTAAACATAAAGCGAGCTTGTGATCGGGAGATTGTCGGCTCAATCGCCAGactgacaggataaaatctgggtggggaaagtgaaagaacagcgcttgtccctccttcattaccaccactgaggtgtccttgagcaaggcccttaac

Function

GO: NA

KEGG:

id description
K16543 CEP89; centrosomal protein CEP89

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33757 lncRNA downstream 2284 1661728 ~ 1662486 (-) True G25113
TU33756 lncRNA downstream 3073 1661359 ~ 1661697 (-) True G25112
TU33755 lncRNA downstream 3417 1660832 ~ 1661353 (-) True G25111
TU33754 lncRNA downstream 4035 1660494 ~ 1660735 (-) True G25110
TU33736 lncRNA downstream 151158 1510165 ~ 1513612 (-) False LOC120556048
TU33921 lncRNA upstream 707588 2448427 ~ 2449619 (-) True G25246
TU33920 lncRNA upstream 708415 2449254 ~ 2449619 (-) False G25246
TU33931 lncRNA upstream 908389 2649228 ~ 2649449 (-) True G25256
TU33952 lncRNA upstream 1088698 2829537 ~ 2829747 (-) True G25275
TU33953 lncRNA upstream 1153876 2894715 ~ 2895109 (-) True G25276
XM_039795401.1 mRNA downstream 22431 1587544 ~ 1642339 (-) True LOC120556047
XM_039795403.1 mRNA downstream 109124 1511493 ~ 1555646 (-) True LOC120556048
XM_039794469.1 mRNA downstream 156862 1459164 ~ 1507908 (-) True LOC120555617
XM_039794471.1 mRNA downstream 156881 1459164 ~ 1507889 (-) False LOC120555617
XM_039794470.1 mRNA downstream 175421 1459164 ~ 1489349 (-) False LOC120555617
XM_039795405.1 mRNA upstream 3353 1744192 ~ 1774283 (-) False rhpn2
XM_039795406.1 mRNA upstream 3354 1744193 ~ 1774421 (-) True rhpn2
XM_039796022.1 mRNA upstream 77592 1818431 ~ 1831946 (-) True lrp3
XM_039796021.1 mRNA upstream 77592 1818431 ~ 1831876 (-) False lrp3
XM_039795607.1 mRNA upstream 94249 1835088 ~ 1846414 (-) True dnaja2a
XR_005638786.1 other downstream 22422 1588886 ~ 1642348 (-) False LOC120556047
TU33668 other downstream 207679 1431968 ~ 1457091 (-) False LOC120555898
unassigned_transcript_137 other upstream 92482 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 534636 2275475 ~ 2277091 (-) True G25228
TU33896 other upstream 534636 2275475 ~ 2276009 (-) False G25228
XR_005638726.1 other upstream 4415383 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 4901607 6642446 ~ 6644606 (-) False dok4

Expression Profile