RNA id: TU33826


Basic Information

Item Value
RNA id TU33826
length 425
RNA type TUCP
GC content 0.49
exon number 2
gene id G25173
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1839333 ~ 1842811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACAGATGAAAGTATTAAGGGTGTTAACCTGGTTCGATGACTTTGCCAGCAGGGTACTTCACAACTATCTGTCTTCCGTCTAAGTGTTTCAGCATAAACTGGAAGCCGCACAGCGCCTCCACCAGCCCAAGTTTGTGGTTCATGAACAGGTCATTGCCATCTCGCCGGAATGTCTCATTCTCTTTTTCCTGCAGGACAAGGACTATATCCCCAGGCTCAACGCCAGGTGCCTGGTCAGCCTCTCCCCCAAAGGTAATTTTCTGGCCGTGCTTCATGCCTTTGTCAACATGTACCTCCAGAATCTTAACCTCTTTCACGACTTTCTTGCCCTCGCATTTTTTACAGCGGTCTTTCTCACTGACAACTTCACCTGGAGTGGGTTAAAAGGAGACAGGGTAAGGGATATGTACAGGCCAGGCCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33792 lncRNA upstream 64893 1769282 ~ 1774440 (+) True G25144
TU33634 lncRNA upstream 423586 1413095 ~ 1415747 (+) True G25008
TU33637 lncRNA upstream 453069 1386048 ~ 1386264 (+) True G25011
TU33613 lncRNA upstream 536381 1302719 ~ 1302952 (+) True G24991
TU33606 lncRNA upstream 580517 1258519 ~ 1258816 (+) True G24984
TU33862 lncRNA downstream 339995 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA downstream 339995 2182806 ~ 2183770 (+) False G25203
TU33885 lncRNA downstream 372436 2215247 ~ 2215548 (+) True G25220
TU33890 lncRNA downstream 468793 2311604 ~ 2312082 (+) False adamts18
TU33891 lncRNA downstream 468793 2311604 ~ 2312157 (+) False adamts18
XM_039795363.1 mRNA upstream 21339 1789953 ~ 1817994 (+) True slc7a10a
XM_039795404.1 mRNA upstream 140974 1674741 ~ 1698359 (+) True zgc:165481
XM_039796055.1 mRNA upstream 454258 1378010 ~ 1385075 (+) True LOC120556440
XM_039796056.1 mRNA upstream 454258 1378010 ~ 1385075 (+) False LOC120556440
XM_039795697.1 mRNA upstream 474607 1312448 ~ 1364726 (+) True LOC120556244
XM_039794589.1 mRNA downstream 196652 2039463 ~ 2182754 (+) True phkb
XM_039794588.1 mRNA downstream 196653 2039464 ~ 2182754 (+) False phkb
XM_039794587.1 mRNA downstream 196653 2039464 ~ 2182754 (+) False phkb
XM_039795089.1 mRNA downstream 397603 2240414 ~ 2312096 (+) True adamts18
XM_039795027.1 mRNA downstream 1381058 3223869 ~ 3236019 (+) True LOC120555875
TU33868 other downstream 239147 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 1942122 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 2727562 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4191398 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 4209076 6051887 ~ 6051969 (+) True trnal-uaa

Expression Profile