RNA id: TU33885


Basic Information

Item Value
RNA id TU33885
length 302
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G25220
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 2215247 ~ 2215548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttaaaggtcccatggcatgaaaatttcactttatgaggttttttaacattaatatgagttcccccagcctgcccatggtcccccagtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcagatgggccgatctggaatcttctccttatgaggtcataaggagaaaggttacctcccctttctctgctttgcccacccagataatttggcccacccatgagagagagacatcatggctttcaaacgagcaaagtggcagttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33862 lncRNA upstream 31477 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA upstream 31477 2182806 ~ 2183770 (+) False G25203
TU33792 lncRNA upstream 440807 1769282 ~ 1774440 (+) True G25144
TU33634 lncRNA upstream 799500 1413095 ~ 1415747 (+) True G25008
TU33637 lncRNA upstream 828983 1386048 ~ 1386264 (+) True G25011
TU33890 lncRNA downstream 96056 2311604 ~ 2312082 (+) False adamts18
TU33891 lncRNA downstream 96056 2311604 ~ 2312157 (+) False adamts18
TU33905 lncRNA downstream 99261 2314809 ~ 2316135 (+) True G25237
TU33923 lncRNA downstream 372324 2587872 ~ 2588152 (+) True G25248
TU33924 lncRNA downstream 373133 2588681 ~ 2611537 (+) True G25249
XM_039794589.1 mRNA upstream 32493 2039463 ~ 2182754 (+) True phkb
XM_039794588.1 mRNA upstream 32493 2039464 ~ 2182754 (+) False phkb
XM_039794587.1 mRNA upstream 32493 2039464 ~ 2182754 (+) False phkb
XM_039795363.1 mRNA upstream 397253 1789953 ~ 1817994 (+) True slc7a10a
XM_039795404.1 mRNA upstream 516888 1674741 ~ 1698359 (+) True zgc:165481
XM_039795089.1 mRNA downstream 24866 2240414 ~ 2312096 (+) True adamts18
XM_039795027.1 mRNA downstream 1008321 3223869 ~ 3236019 (+) True LOC120555875
XM_039795613.1 mRNA downstream 1035060 3250608 ~ 3273178 (+) False adgrg1
XM_039795611.1 mRNA downstream 1035061 3250609 ~ 3273178 (+) True adgrg1
XM_039795612.1 mRNA downstream 1035061 3250609 ~ 3273178 (+) False adgrg1
TU33868 other upstream 131928 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 372436 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 1569385 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 2354825 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 3818661 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 3836339 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 3837267 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile