RNA id: TU33890


Basic Information

Item Value
RNA id TU33890
length 479
lncRNA type sense_over
GC content 0.39
exon number 1
gene id adamts18
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 2240414 ~ 2312157 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tattgtcgTTTTGTCGAGTGTTTTCCTTCTGAAACCTCTAAAGCTACAAGCCATCACGAGAACAGGAAAGGACAGTAGCGTTTTAGCTTGCTTATATGTTGTATTTTTAAAGGCGTCTGGTTTGCATACGCCTTTATTTAAGTTATTATGGTTGGTAATATAtgattttacattttgtgagGTGTACAGTGGATCTGTGAGATGTTATTTCTATGTTTTTTGGGTATATCATAGGACTGTGCCAGTCACCCTTGGATCCACGTTATGAGATTTTATATGAGGCATTAGTAATCAGTGGTCAGATGCCTTCTGCACTtcctccttcacacacactctctccgcTTGTTATGTTTACTGCTGCTGAATCATTTGGAATGAGTCACGTTAACGCTATGAAAACATGCCTATCTGTgtacataaaacattttatccAGTCACGTTGTAAGTGGTCGCTCTCCTGTACGATTATGGTTAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33885 lncRNA upstream 96056 2215247 ~ 2215548 (+) True G25220
TU33862 lncRNA upstream 127834 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA upstream 127834 2182806 ~ 2183770 (+) False G25203
TU33792 lncRNA upstream 537164 1769282 ~ 1774440 (+) True G25144
TU33634 lncRNA upstream 895857 1413095 ~ 1415747 (+) True G25008
TU33905 lncRNA downstream 2727 2314809 ~ 2316135 (+) True G25237
TU33923 lncRNA downstream 275790 2587872 ~ 2588152 (+) True G25248
TU33924 lncRNA downstream 276599 2588681 ~ 2611537 (+) True G25249
XR_005638739.1 lncRNA downstream 328002 2640084 ~ 2640928 (+) True LOC120555634
TU33937 lncRNA downstream 404988 2717070 ~ 2717460 (+) True G25262
XM_039794589.1 mRNA upstream 128850 2039463 ~ 2182754 (+) True phkb
XM_039794588.1 mRNA upstream 128850 2039464 ~ 2182754 (+) False phkb
XM_039794587.1 mRNA upstream 128850 2039464 ~ 2182754 (+) False phkb
XM_039795363.1 mRNA upstream 493610 1789953 ~ 1817994 (+) True slc7a10a
XM_039795404.1 mRNA upstream 613245 1674741 ~ 1698359 (+) True zgc:165481
XM_039795027.1 mRNA downstream 911787 3223869 ~ 3236019 (+) True LOC120555875
XM_039795613.1 mRNA downstream 938526 3250608 ~ 3273178 (+) False adgrg1
XM_039795611.1 mRNA downstream 938527 3250609 ~ 3273178 (+) True adgrg1
XM_039795612.1 mRNA downstream 938527 3250609 ~ 3273178 (+) False adgrg1
XM_039794180.1 mRNA downstream 967994 3280076 ~ 3305488 (+) True slc7a6
TU33868 other upstream 228285 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 468793 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 1472851 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 2258291 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 3722127 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 3739805 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 3740733 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile