RNA id: TU33989



Basic Information


Item Value
RNA id TU33989
length 838
lncRNA type inter_gene
GC content 0.58
exon number 3
gene id LOC120555484
representative False

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3309375 ~ 3379915 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTCAGCATTCATTCATCtgtccgtccatccatccacaCACACCAGTTCTCCCTCATCGGTGTAGGCCCTGACAGACAGGATGTCCTGGATCCAGCCTGGCGCGACCATTTCCTGGTAGTAGAGATCGTAGACGTAGTCGTCGTCCTGCTCCCGGTGCTCTTCCCCCAGTCTCTCTCCGGTGATGCTCAGGTGCTCCCGCAGCATCTTGGTGCTGTTACACAGGATCACTTCTGGGTCTGAGGACAGcgtCTTGCTAGATTTGTCCTGCTCCTCTACATCCTCATGTAGGAGATCAACCACCTGGATTGCACCGAGACCCAAACATTTGTCCTGCTCTTTCCCAGTGTCCTCCACGCCATCAGAAGCTTCCGTCTGGTTGGTTTGCTGCTCCGCCGGGCTGGACAGCCCTGTACGGTGGCTGGAGAGGATTCTGTAGCGTTCCTCCCTCCGGGTGCTCCACTTTGCGCTCCGGAGGTCCCCGATGATCCGTTGGGAACTGGCAGCAGAGGGGCGCAGTGCGTGGGCCATGCGAGGCCGAGCCAAAGCCTGTCGCACCTGTGTCTGAACAGGAGCATCCTGTGTCGCTACGGTCGCCACGAGTTTGAAGACAGAATTTTCCACCTCGGCTTCATTCGGCTCCGGTACCGTTTCCCCTGAGCCCTGGGACGTCTCCGGCCGGATACGTTTACACGCCAACAACAACGCATCTGCTGGGTCGGTCCCCCTTTTCCTCTTGACTCGCAGAATCGTCGTGTTCGGATCCATGTTGTTCCTCTGTCCGCTGAGTTTGTCTGGTTTGTCTGGCAGACTGGGAGGAGGGAAATGAGGAAAGCTCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU33995 lncRNA upstream 659 3309375 ~ 3313695 (+) True LOC120555484
TU33966 lncRNA upstream 173967 3139689 ~ 3140387 (+) True G25288
TU33958 lncRNA upstream 342444 2971607 ~ 2971910 (+) True G25281
TU33956 lncRNA upstream 344096 2969770 ~ 2970258 (+) True G25279
TU33937 lncRNA upstream 596894 2717070 ~ 2717460 (+) True G25262
TU34004 lncRNA downstream 43199 3361143 ~ 3435233 (+) True G25316
XR_005638718.1 lncRNA downstream 64712 3382656 ~ 3388513 (+) True LOC120555485
XR_005638719.1 lncRNA downstream 70578 3388522 ~ 3389725 (+) True LOC120555486
XR_005638720.1 lncRNA downstream 95068 3413012 ~ 3414535 (+) True LOC120555487
TU34083 lncRNA downstream 145113 3463057 ~ 3463523 (+) True G25380
XM_039794180.1 mRNA upstream 8866 3280076 ~ 3305488 (+) True slc7a6
XM_039794181.1 mRNA upstream 8866 3280078 ~ 3305488 (+) False slc7a6
XM_039795613.1 mRNA upstream 41176 3250608 ~ 3273178 (+) False adgrg1
XM_039795099.1 mRNA downstream 103259 3421203 ~ 3422406 (+) True LOC120555909
XM_039794972.1 mRNA downstream 163353 3481297 ~ 3518086 (+) True mmp15b
XM_039794595.1 mRNA downstream 305690 3623634 ~ 3724143 (+) True mtss1lb
XM_039794599.1 mRNA downstream 305690 3623634 ~ 3724143 (+) False mtss1lb
XM_039794597.1 mRNA downstream 305690 3623634 ~ 3724143 (+) False mtss1lb
TU33868 other upstream 1231035 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 1471543 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 466989 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 1252429 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 2716265 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 2733943 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 2734871 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile