RNA id: TU34004


Basic Information

Item Value
RNA id TU34004
length 276
lncRNA type sense_over
GC content 0.55
exon number 2
gene id G25316
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3361143 ~ 3435233 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGGTGATGCTCGCTAATCCCCAAGGTAAGCCCAGCACACAGCTGAGGCCCAGCACTGTGGCACAGTCTTTCAATAACTTCATCCCTTTCTCCCTGTTTATCTTCTTCCAGCCACTGCTTTGAGCGCCTCCACTACCTGCCCGTAGCCCCCAGAGCTTAAACACCACCAGCCCCAGCATGCAGGAATTACACAGTATCATCAGCACACATGGGACGGCCACGGTAGTGATGAAGCTGACCAGGAGCCTCTGTGGGAACTGGCTGCTCATCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638717.1 lncRNA upstream 39729 3317065 ~ 3321414 (+) False LOC120555484
TU33989 lncRNA upstream 43199 3314354 ~ 3317944 (+) False LOC120555484
TU33993 lncRNA upstream 45900 3309375 ~ 3315243 (+) False LOC120555484
TU33995 lncRNA upstream 47448 3309375 ~ 3313695 (+) True LOC120555484
TU33966 lncRNA upstream 220756 3139689 ~ 3140387 (+) True G25288
TU34083 lncRNA downstream 27824 3463057 ~ 3463523 (+) True G25380
TU34089 lncRNA downstream 46088 3481321 ~ 3484224 (+) False mmp15b
TU34124 lncRNA downstream 179013 3614246 ~ 3614516 (+) True G25418
TU34149 lncRNA downstream 380604 3815837 ~ 3816148 (+) True G25436
TU34212 lncRNA downstream 910405 4345638 ~ 4348769 (+) True G25486
XM_039794180.1 mRNA upstream 55655 3280076 ~ 3305488 (+) True slc7a6
XM_039794181.1 mRNA upstream 55655 3280078 ~ 3305488 (+) False slc7a6
XM_039795613.1 mRNA upstream 87965 3250608 ~ 3273178 (+) False adgrg1
XM_039794972.1 mRNA downstream 46064 3481297 ~ 3518086 (+) True mmp15b
XM_039794595.1 mRNA downstream 188401 3623634 ~ 3724143 (+) True mtss1lb
XM_039794599.1 mRNA downstream 188401 3623634 ~ 3724143 (+) False mtss1lb
XM_039794597.1 mRNA downstream 188401 3623634 ~ 3724143 (+) False mtss1lb
XM_039794596.1 mRNA downstream 188401 3623634 ~ 3724143 (+) False mtss1lb
TU33868 other upstream 1277824 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 1518332 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 349700 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 1135140 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 2598976 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 2616654 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 2617582 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile