RNA id: TU34083


Basic Information

Item Value
RNA id TU34083
length 438
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G25380
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3463057 ~ 3463523 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaagatggaactgtcaacgtagagcaaggtaagaaacagcgcagccaacgtttacgagccttgtaacgtaacgtaacaggccagctctcatgttaacgtccattagcttgtataaaagcctgacacaacacgttaactttgacagaaacagttgagtttggtagctccgtcagagaggatgagacagagagagatccagctgcagtcaggtgacagagagagtgatgcgggaggggcccgctgccccgcaacggagggacagagtcaggctacccgtgagagagagagagagagagagagagagatgcgggggggctcgctgccctgtcggagagtctgagcaggatggatcagagactgattacacacttaatttcagtgagagatgtgaggagaggaagagcaagggaaaaggagagatctggccgcgagggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34004 lncRNA upstream 27824 3361143 ~ 3435233 (+) True G25316
XR_005638720.1 lncRNA upstream 48522 3413012 ~ 3414535 (+) True LOC120555487
XR_005638719.1 lncRNA upstream 73332 3388522 ~ 3389725 (+) True LOC120555486
XR_005638718.1 lncRNA upstream 74544 3382656 ~ 3388513 (+) True LOC120555485
TU33996 lncRNA upstream 83142 3309375 ~ 3379915 (+) False LOC120555484
TU34089 lncRNA downstream 17798 3481321 ~ 3484224 (+) False mmp15b
TU34124 lncRNA downstream 150723 3614246 ~ 3614516 (+) True G25418
TU34149 lncRNA downstream 352314 3815837 ~ 3816148 (+) True G25436
TU34212 lncRNA downstream 882115 4345638 ~ 4348769 (+) True G25486
TU34213 lncRNA downstream 882229 4345752 ~ 4348769 (+) False G25486
XM_039795099.1 mRNA upstream 40651 3421203 ~ 3422406 (+) True LOC120555909
XM_039794180.1 mRNA upstream 157569 3280076 ~ 3305488 (+) True slc7a6
XM_039794181.1 mRNA upstream 157569 3280078 ~ 3305488 (+) False slc7a6
XM_039795613.1 mRNA upstream 189879 3250608 ~ 3273178 (+) False adgrg1
XM_039794972.1 mRNA downstream 17774 3481297 ~ 3518086 (+) True mmp15b
XM_039794595.1 mRNA downstream 160111 3623634 ~ 3724143 (+) True mtss1lb
XM_039794599.1 mRNA downstream 160111 3623634 ~ 3724143 (+) False mtss1lb
XM_039794597.1 mRNA downstream 160111 3623634 ~ 3724143 (+) False mtss1lb
XM_039794596.1 mRNA downstream 160111 3623634 ~ 3724143 (+) False mtss1lb
TU33868 other upstream 1379738 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 1620246 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 321410 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 1106850 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 2570686 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 2588364 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 2589292 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile