RNA id: TU34093


Basic Information

Item Value
RNA id TU34093
length 2197
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G25388
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3508116 ~ 3522611 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATGTCCAGCATGGCTTTGTTAACACACTCAACTAGAGgtgaacacacaacaacacaaatgtaTAAAATCTTACGTTttctacagaaaaaaaaaccccactaaCAAccaatcaacaaaaaaaagagaattggaatgttaacaaaaaaaatatcctATCAAGTTTggagagacaaaaaatgcacaaaatacaATCAAAATAAGACAATTATCAAAGATAAACAATAACCTCATCTGTTTTTTATTgactgctgcttttttttttcctttttgttcttATCCCAGTCAAGGACGAtggttaagtttttttttcttctgaaagtCACTGAACCATTACTCAGGTAGTAATGAAGAGAGGCTGAGTGTGAGATGCCAAGTTCCACTACTGACGGTCAGTGTGAGAAATAACTGAATCCATCCGactctactctctactgtagCTGCGGTTAGTGGATGAAAGCAGTTTTCTTGAGCGGGGCTGCTCAAGACTTCCAATGCCTGTCTGAAGCACCGTGAGAGCTGATCCGATGCACTCGTCCCGACTCAGATGCTGAAAGCCATTTGTCAGCCACCTTTTCTGTCTCGTCCCCCGCGGGGTGTGTAGTCGAGTTAGCCGAGTGGTGCTAAAATGAGTGGTTTCAGAGTGGAtggtgggggggcggggggtggGGGTCAATGCAAGGTGAGATGCACTCTGGGAAAAGAGAGAAGCATCTGGACAACCCACGATCCTTTTGGGTTCCAGCCATCATAAGCCACAAGGTTGACCCAAGTGGAAGTGAAACAGAACACAGTCGTACTGCATGTCACGTTggacagatctttttttttatttatttttttcctcctttgtcCTGTTCAGTCCGTTATTTATTGATCCGGTTTTCCCCTGCCGAGCTAGACTTTGCACAGGGCTGATGCAATGACTTTTTGAAGCTTGCCGTTATTAAGAAGTGCAGGTATACGCGGTGACCTCAGGAagctgaaaacacaacacaagtgCACAGAGTGGAGAGCGCAGACACGGCTAGAAGCGTACGTGCCTTCTGAGTGATTGTGGAGATTTTTTTCACCGAGATGTTCATTAtaataaaagacacaaaaaaaaaaagcaaggtaTAAAGCCAAAACAGCGGGGCTGAATAAGGAACGATTAACATGCAGTGTTTACAGAAACCCATCCTGAGAGAGATGAAAGCTCAGAcaagctcagcgatgccctaaCCTTACCTCAACTTTGCATATCGAGGCAATGCACTCCAAAACGAACGGGGCAATATGAACATAAAATAACTTAGGTACAGTGTTTGGAAGCGAATCCTTCCACATTATTAGATGTTGCTGAACAAGGAGGTGGATCTAAAACCAGGCTCTGCTGTGTGAGGCTGGACCTTGGCCTGGACTAGTTTCCtaaggaggggggaggaggaaggtgaGGTTGGGGAAGACAataacgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtattagggaGAGGGGAAAATAGGCGCAGGAGAAAGAGAGTGTGTttctgagagagggagagagagtgagagagaaggcCATTGTTGTTATTATGATCCCCTCGGGCTTAGTGGGCAGGGCtgggctggtgtgtgtgtgtgtgtgtgggggggggtgataGAGAGAGTGTGGGAGATTTACAGTCAGGAAACCGGCCTTCGCTTATGGAGAGTAGAGCTGATTAACTAAACACctcgacacaaacacacacacacacacacacacacacacacacatcaatcagCGTGGACAGCTTTCTTTCCCAGCgttttcaatatttttctctTGTGCTTGCTGTCCTAAGACAAGGATTCCCTGTCAGTGTCACCCTACAGAGAATCTCTCGAGCTGCCGGATCGCAGAAACTGTGATTTCAAATTAAGAAAACTCAGGTACGCTACATTTTGTTTCAACTTTTGAGTGGTTACTTCAGCTTTTGAAGTGGGTAACTCCCAGTGGGATTGCTGTGTGGAAGTCACAGTGGAGAAAAGGAGGGGCTGATAAACGAGAACTCCGTACACACAATGCTGTGTCGAGTACAATGAGTCGACATTTTCTAAGCCTGTCCAGACACTAGGCTGTCTAAGCACGGATGTGCCTGGAGGACCAATGGAAGAacaggacaggagaggagagaacagaGGAGGGGTGAAGGGGaggggggggggttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34106 lncRNA downstream 9580 3498171 ~ 3498536 (-) True G25400
TU34100 lncRNA downstream 39034 3468664 ~ 3469082 (-) True G25394
TU34098 lncRNA downstream 42456 3465343 ~ 3465660 (-) True G25392
TU34097 lncRNA downstream 44593 3463233 ~ 3463523 (-) True G25391
XR_005638716.1 lncRNA downstream 204261 3302972 ~ 3303855 (-) True LOC120555480
TU34133 lncRNA upstream 66369 3588980 ~ 3589270 (-) True G25423
TU34135 lncRNA upstream 66730 3589341 ~ 3590131 (-) True G25425
TU34139 lncRNA upstream 162113 3684724 ~ 3724120 (-) False G25428
TU34140 lncRNA upstream 192180 3714791 ~ 3724120 (-) True G25428
TU34146 lncRNA upstream 278915 3801526 ~ 3801827 (-) True G25433
XM_039794173.1 mRNA downstream 32224 3459107 ~ 3475892 (-) True LOC120555474
XM_039795100.1 mRNA downstream 49383 3433759 ~ 3458733 (-) True LOC120555910
XM_039795091.1 mRNA downstream 134424 3360553 ~ 3373692 (-) True LOC120555905
XM_039794182.1 mRNA downstream 160909 3320424 ~ 3347207 (-) True LOC120555482
XM_039794183.1 mRNA downstream 190183 3309380 ~ 3317933 (-) True slc7a6os
XM_039795927.1 mRNA upstream 67669 3590280 ~ 3601433 (-) True dhcr7
XM_039794109.1 mRNA upstream 742633 4265244 ~ 4323654 (-) False dpy19l3
XM_039794107.1 mRNA upstream 742633 4265244 ~ 4323653 (-) True dpy19l3
XM_039794110.1 mRNA upstream 742634 4265245 ~ 4333520 (-) False dpy19l3
XM_039794106.1 mRNA upstream 828887 4351498 ~ 4375298 (-) True znf507
TU33895 other downstream 1231025 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 1232107 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 1674722 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638786.1 other downstream 1865768 1588886 ~ 1642348 (-) False LOC120556047
TU33668 other downstream 2051025 1431968 ~ 1457091 (-) False LOC120555898
XR_005638726.1 other upstream 2633611 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 3119835 6642446 ~ 6644606 (-) False dok4
XR_005638761.1 other upstream 3810173 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 4621596 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 5330176 8852787 ~ 8979076 (-) False LOC120555589

Expression Profile