RNA id: TU34229


Basic Information

Item Value
RNA id TU34229
length 320
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G25498
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4446595 ~ 4446914 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtactttatttgtcacatacacgtacatgtagcgaaattcattctctgcatttaacccatccctcaagggagcagtgggcagccaatgacagcacccggggaccaactccagatctgacccagtgccttgatcaagggcactgactggagaacctagtacatgtttttgatggtgggggaaaccggagcacccggaggaaacccacgcaaacatggggagaacatgcaaactccacacagaaaggccccggAACGACTTGGATTCGAacacagaaccttcttgctgtgaggccacagtgctaaccactggaCCACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34212 lncRNA upstream 97826 4345638 ~ 4348769 (+) True G25486
TU34213 lncRNA upstream 97826 4345752 ~ 4348769 (+) False G25486
TU34149 lncRNA upstream 630447 3815837 ~ 3816148 (+) True G25436
TU34124 lncRNA upstream 832079 3614246 ~ 3614516 (+) True G25418
TU34089 lncRNA upstream 962371 3481321 ~ 3484224 (+) False mmp15b
TU34276 lncRNA downstream 235210 4682124 ~ 4682470 (+) True G25541
TU34285 lncRNA downstream 389697 4836611 ~ 4837267 (+) False tshz3b
TU34302 lncRNA downstream 443813 4890727 ~ 4890996 (+) True G25567
TU34339 lncRNA downstream 1183750 5630664 ~ 5633030 (+) True G25593
TU34365 lncRNA downstream 1227452 5674366 ~ 5675988 (+) True G25611
XM_039794111.1 mRNA upstream 105307 4333065 ~ 4341288 (+) True LOC120555425
XM_039795101.1 mRNA upstream 192521 4163676 ~ 4254074 (+) True LOC120555911
XM_039795609.1 mRNA upstream 294531 3873032 ~ 4152064 (+) True LOC120556182
XM_039794600.1 mRNA upstream 722452 3623634 ~ 3724143 (+) False mtss1lb
XM_039795582.1 mRNA downstream 346901 4793815 ~ 4837285 (+) True tshz3b
XM_039795585.1 mRNA downstream 346901 4793815 ~ 4837285 (+) False tshz3b
XM_039795583.1 mRNA downstream 347444 4794358 ~ 4837285 (+) False tshz3b
XM_039795586.1 mRNA downstream 347444 4794358 ~ 4837285 (+) False tshz3b
XM_039795581.1 mRNA downstream 348348 4795262 ~ 4837285 (+) False tshz3b
TU34144 other upstream 661053 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 2363276 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 2603784 1839333 ~ 1842811 (+) True G25173
TU34243 other downstream 123459 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 1587295 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 1604973 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 1605901 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 1818060 6264974 ~ 6266708 (+) True LOC120555541

Expression Profile