RNA id: TU34276


Basic Information

Item Value
RNA id TU34276
length 347
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G25541
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4682124 ~ 4682470 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGTTGTAAATTTGCGTGAAATGtataatggtcggcatttaGTAGTCACAAACTCCCCCAGCAGTTAGCATTTCGTTGGATACAAGCAGCTAATTAAAGCCTGTGTTAAACAGCCCATCTCCACTCTTACCCGGcaacatgtttccacaacaagaaaaacagcagtctctgaactcgcgatgggagtttcgttgaagttggatgtagtccagtttgttgtctaatgagcagacacttgcaagcagcattgatggaacaggtggctggctagcgttagctttccacctagctaggTTAGCTATACTCCAGCCCCCGTTTGCGTTTCACCGCTGAGAATGTCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34229 lncRNA upstream 235210 4446595 ~ 4446914 (+) True G25498
TU34212 lncRNA upstream 333355 4345638 ~ 4348769 (+) True G25486
TU34213 lncRNA upstream 333355 4345752 ~ 4348769 (+) False G25486
TU34149 lncRNA upstream 865976 3815837 ~ 3816148 (+) True G25436
TU34124 lncRNA upstream 1067608 3614246 ~ 3614516 (+) True G25418
TU34285 lncRNA downstream 154141 4836611 ~ 4837267 (+) False tshz3b
TU34302 lncRNA downstream 208257 4890727 ~ 4890996 (+) True G25567
TU34339 lncRNA downstream 948194 5630664 ~ 5633030 (+) True G25593
TU34365 lncRNA downstream 991896 5674366 ~ 5675988 (+) True G25611
TU34421 lncRNA downstream 1180189 5862659 ~ 5862867 (+) True G25663
XM_039794111.1 mRNA upstream 340836 4333065 ~ 4341288 (+) True LOC120555425
XM_039795101.1 mRNA upstream 428050 4163676 ~ 4254074 (+) True LOC120555911
XM_039795609.1 mRNA upstream 530060 3873032 ~ 4152064 (+) True LOC120556182
XM_039794600.1 mRNA upstream 957981 3623634 ~ 3724143 (+) False mtss1lb
XM_039795582.1 mRNA downstream 111345 4793815 ~ 4837285 (+) True tshz3b
XM_039795585.1 mRNA downstream 111345 4793815 ~ 4837285 (+) False tshz3b
XM_039795583.1 mRNA downstream 111888 4794358 ~ 4837285 (+) False tshz3b
XM_039795586.1 mRNA downstream 111888 4794358 ~ 4837285 (+) False tshz3b
XM_039795581.1 mRNA downstream 112792 4795262 ~ 4837285 (+) False tshz3b
TU34243 other upstream 106479 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 896582 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 2598805 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 2839313 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 1351739 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 1369417 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 1370345 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 1582504 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 1604578 6287048 ~ 6288077 (+) True G25743

Expression Profile