RNA id: XM_039795586.1


Basic Information

Item Value
RNA id XM_039795586.1
length 6161
RNA type mRNA
GC content 0.47
exon number 3
gene id tshz3b
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4793815 ~ 4837285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGATTGCCTGGAAAACACAGGAGAATATTTTGGATCCACTTCACCAACTCAGTTGAAtccaaaaacttttttttttactcctagCTGTAAGGTGAAACACAgcgaggagaagaagaaaaaaaaagaattttgaATAACCTACATCTCAACTAAGGAGGATTTTGAGCTTAcctgtggaggaaaaaaaaaaccgaCTTTATTCCGTTCAGTGGCAAATAAAAGGAACAGCGCTTTGCTtgCTCGCCTGTTGCAGCCTCCGACGCCAAGTAAAGAGGATCACACGGAGACAGGAGgcgctttctttttttttcttttttccttttttaaaccaCCGTACTCTGTGTTTTTCTACCGCGGAGAGAGCCCCCCCTCCCCTCGATCTGTTCCTGCTCCCGCCGCGTCCATCCAAGAGTCGGAGCGGGCGAGAGAGCGACCGAGCGACCGCCAGAGAGAGAGCAGCCAACCGGAGGAGTCACGCTGATTTTttgcccccctcctcctctctcccttttttttattatcttcgCATCTActggtgatttctttttttttttttttttttttggtgtgtgttcGAAAACTGCACACCCTCCCCTCCTTACCCACACCCACCCCGATCTATGTGGGAGCCCTGAGAGCGCACCCAGGGGGGTGGGAAACTGTGTATCAAAGCTCCGCGGATCCCCCAAAAGCAGCATCGAATCACCGGGGCCAGAGAAGAACTCCCTGCCGGGCCCCCGAAGCCGATATGCCGCGGAGGAAGCAGGAGGCGCCTCGGCGCGCCGCAGcatACGTCCCTGAAGATGAGAAGGAAGCAGCCCTGCTGGATGAGGACCTGGATGGAGATGACTCAGCTCAGGAAGGGGAGGAGCCTGTTGCCAAGTTCTTATGTCAGGACAAGGACTTCCTTCTTAAGGACAGGCCAGGATCCACTGGCTTTCATGACTCCCCCAATGCAGCTGACTTTTCTGGACAAGAGCTGGACAGTGAGTCTCACCTGAGTGAATCCAGTGACAGAATGTCTGATTTTGAGATCTCCTCACTTAAAACTGAGGATGATGTCCTCCTCTCTAAAGACCCCTCCAATGCCATTTCCCTATCGTCCTCCTCTGTCATGATGGCTGCTGCCAATGCTGCTGCCCCAGTAAGTGGAGATGAGGCCATATTAACCACAACGGGGTCAGTGGCTGACAGCCTGGAGAAGATGAAGGCCATTTACACCTCCTTCCTGACCAACTCCTATTGGTCCACACTGAATCTGAACATGAGCCAGCCCCCTGCAGAAAAACCCCCTCGcagtcacagcagcagcagtagtagcagcagtagcagtagctgtGGAAGTGGAGGCTATGACTGGCACCAGACAGCTATGGCTAAAACCCTACAGCAGGCCTCACAGAACCACCACAGCAGACTGGGCATGGTTCAGCAACCCACAGTGGCTGTATCCACAGCGTCTACAGAACCCAACCTCTTTAGTACCGTCCAGCTGTACCGGCAGAGCTCCAAGCTGTATGGCTCTATATTCACTGGTGCCAGCAAGTTCCGCTGTAAGGACTGCAGTGCGGCATACGACACACTAGTAGGGCTTACGGTGCACATGAATGAGACAGGCCACTACCGTGATGATAACCACGAGACAGACGGTGAGGGTGCTAAACGGTGGTCAAAACCCAGAAAGCGTTCCTTGCTAGAGATGGAGGGAAAGGAGGATGCACAGAAAGTTCTGAAGTGCATGTACTGCGGGCACTCCTTTGAATCCCTTCAGGACCTAAGTGTCCACATGATCAAGACAAAACACTACCAGAAAGTGCCTCTGAAAGAGCCTGTTACGCCAGTGGCAGCTAAGATTATCTCCTCGGCTCGAAAGAGAATCCCTATGGACCTAGATATCCCTAGCTCCCCAGACTCTAATGGAGGCACCACACCTAAGCCCACCTCCCTCAATGACTCTAATGACATACTCCAGAAGGTCACCAACCCTTACATAACACCTAACAACCGCTATGGACACCAGAACGGTGCCAGCTATGCTTGGCAGTTTGAATCCAGGAAGTCACAGATCCTCAAATGCATGGAGTGTGGCAGCTCTCATGACACACTGCAAGAGCTAACTGCTCACATGATGGTGACCGGACACTTTATTAAAGTCACCAACTCTGCTATTAAGAAAGGCAAACCCATTTTAGAGTTGTCCTCCCCAACCCCCACACCCAATTTAACCGCTGAAGAAAAGGTCCAGTCCGTTCCCTTGGCTGCCACAACCTTCTCCCCTCCACCTGCCCCGGTGCCTCCTCCAACCAGCATCTCCCCCACTGCCATGGTTGTGGAGATAaaaaaggaggagaaggaggaggaatgCACTAAAGAGTCCATCATCAACAATGGTAACAATCTCAACAAGGAGAAGAAGGCAGGAGGTGAGGAAGAGGCTGAGGAGAAGTTTGATATTTCTTCAAAATACTCTTATCTGACTGAGGAGGATCTGGATGACAGTCCAAAAGGGGGTCTTGACATCCTTAAGTCCTTGGAGAACACAGTAACCTCAGCCATTAACAAAGCCCAGAATGGAGCTCCAAGCTGGGGTGGATATCCAAGTATCCATGCTGCCTACCAGCTCCCAAACATAATGAAGCTCTCACTAGGCAACTCCGGGAAGAGCTCTCCCCTTAAATACATGTTCCCTGGAGGGGAGATTCTCTCTCCAACTGGTAAGATCCAGCCTTTCATCTCCCCTCCCAGCCGCCAGAACTCCCCCCTACCCAAAAACAACTTCCATGCTATGGAGGAACTGGTCAAGAAAGTGACAGAGAAAGTGGCCAAGGTAGAGGAGAAAATGAGAGAGCCCAGTGGTGTTGTGAGGGGATCTCCTCTGAGATGTACCACGCCCTCACCCTGCAACAGCGAGGCAGGGGACTCAGTCCGAGGAGAGTCACCCAAAGAGAATAGAGCAGGAGGCTGTAAAACTCCAGAGAATACAAGTGGAGCGGAAAAAGCAGTAGGTGATGGAACCGGAGCCAATCACAGAGATTCCAATGGAGATATTTCCATAAAGGAGTCTGTGGAGAACGGAGTGGAGTCAACTGCGGTGACATCCCCCCTTCCTACCTCCCTGTGTGGCAGTACAGCTATCATCACAGACCATCCACCTCCTGAACAGCCATTTGTCAACCCTCTGAGTGCCCTGCAGTCAGTAATGAACGTCCACCTGGGGAAGGCCGCTAAGCCTGCCTTGCCCTCTCTTGACCCCATGAGCATGCTGTTCAAGATGAGCAATAGCCTGGCAGAGAAAGCAGCGGTGGCTGCGTCCACCCCACCAGCACAGACCAAAAAGCCCAGTAATGACCGCTTAGACCGCTACTTCTACCAGCAACATCTAAACAACGACCAACCCATAGATCTCACCAAAGGCAAACATGCTGACAAAAACAGCAATAGTGGTTCTTTGGGTTCAACGGCTCTCTCTTCCACCACAACCACCCCATCCTCGATTTCTCCCTCCTCCACTGTCACTATGACCAAAGCTTCAGCTGCAGTAGCTTCCTTTATGTCCACCTCCCCTTTGAGAGAAAACGCACTGTCAGACATCTCGGACATGTTGAGGAACCTGACAGAAAGTCAGGCTGTCTCCAAGTCCTCCACGCCTACCAGCCTGTCTGAGCGCTCCGACATTGAAGGTGTCACACAAGAGGAGACAGAAGATATTTCACCAGCCCAGAAACGTAAAGGCCGGCAGTCCAACTGGAACCCTCAACACCTTCTCATCCTACAAGCCCAGTTTGCCTCCAGTCTGAGACAAACAAATGATGGCAAGTACATCATGTCGGACCTGAGCCCACAGGAGAGAATGCACATCTCCCGTTTCACTGGCCTTTCAATGACTACAATATCCCACTGGCTGGCTAATGTCAAGTACCAGTTGAGGAGAACCGGTGGCACCAAGTTCTTAAAGAACTTGGATTCAGGTCACCCCGTGTTCTTCTGCAGCGACTGCGCCTCTCAAATCCGCTCACCATCCACCTACGTCAGCCACTTGGAATCTCACTTGGGCTTCCGTCTGCGAGACCTGTCCAAGCTTTCTGGGGAGCAGCTGCTCAGCCAGATTTCGCAGCAACGTCATCAACGCCACACCAAAGGACTATCTGAAAAACTGCTCTCTAATCTTCATCCATCCAGCCACCCTTTACCCTCCTCCTTACCCACATCCATTCCCTCTTCCTTACCCATCTCCCTGGCCTCGTCCTTAACCACCTCTCTGCCCTCAATTGAATCCCCGTCACCCTCCCCCGATGACGACGATGGCGGGGCTGTGTACCAGTGCAAGCTCTGCAACCGGACTTTTGCGAGCAAGCATGCGGTCAAGCTTCACCTGAGCAAGACTCATGGGAAGTCCCCTGAGGACCATCTCATGTACGTGTGTGAGCTGGAGAAACAGTAGCACTGGCTACTGGAAGACAATGCTGCGTTCTTTTGTAATGGCTCACTCTTtcttgctctgtctctcttaagCCTTTCACAGACATTTCtttcaaagaaaagaaaggattATTAACGTGATGGAACTGCACAAAGATGCCATACAACTACTGTTTTAAGTTTTGGCACATGGTTTTCAATTTTGTGTTGTagcagttgtttttttcttccttttgtcGCTGTGTGAGGTAGACTCACTCTGACCCAAGacactattttagtgatttccTTTGACAGGAATAgagtgactttttttcaaaatgcgcAGATCGGGGCTGTTGTCATTGAGAAGTACAGTATatgaaggtttaaaaaaagagattcTAAAATGAAGTGGTGTGTATTTTGAAACTTGTGTAAATGGAATTAAGTTCCTTTATATTTTGACATCACTGGGATGTGATAAGCTGCATGCATAAATGAAACAGTTTAGTTAAACATTTTATAACTAAATCTGGTGCACtttccatgatttatttttgtttgtttgtttttcactctCCCGCTCGctctctttattttcttttgggTTTTTTGTGCTGGAGTCAGCATTTCAAATTTAACCCTCTGAGTACGTCAAAGCACTTCTACACCTAAGATCCCAACACTATTGACTCACGATTTAAGATTGTGAATTATCTATTGTGAGAATTGAAAGGACAAAGTGTGCATTGTgtcagacatacagtatgttgagtCTAATCCCAGACAtgaaagcattttttcaaaaggaGATTCTCTATTCACTGCAAGGTTTTCATCTCGGGCTTAATATTTGTTTGAGATATGTTCACAGAACTTAACACGAGCATTTTActatgtggtaaaaaaaaaaaaaaagaagaaatctgAAGTATTTTACTTTGGTCGAAGAAGGACCTATATTAATTCAGGTCTgtgtaaaatatgtatatacAAAACATTAACTAATTCCTGTCTAAATTATGCATACtttctatattttttaatttaaaaggaTTATGACTATCTGCTGGTGCACAGTATATGAAGACATGAATACAATTGTTTTGCACAATAGTTTtataaatgtgttatttaatCAAAGGATACGAAAAAGATAGGTAGCAAAAGGATGACAACAGGTGAATCTTTTTATTCCCAACTCGTGCTCAAAGGGTTAAAGGCTCTTTTTACCAGACACTACTCTACATGTGCCGCTGTATGAACACTAAATAGATATTAAAGGTTGTACAAAAAAGATGTTACTTTATAAAGATATTTCACATGTAAACTGTTATTTATAAGCACTCTTGGTTGTTTCATATCGTTGAATGCCTTTTCGATTGGTCCTATTATTTTGTTCTGTCTAATTGCTCTGCCATGATTCCACACTGCAGCTTTATCTTTTTGAGATATGAAAGGTAACCATGGTTACACTAACCTCTTGAGTGACAAGTTCTGCTACATTTTTGGCAGTTAATTTGCTGAAGTAACTGACAGCTGCCAGAGtagagaaataataaaaaaaaaatccttatgTGTAAAATATCGGCATGTAAACAGCACAGATACTGTAATGCATTCTGTGCCGTTAGTCTTTTTCCATTTCGTTCTTTcgttttctgttgttgttgttcttgacAATGAACCCCCATTATATGACTTCATATAACCTTGTTTTCTACTGCAGCATTAAAAAATGGAAACAGTTTTTtgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34276 lncRNA upstream 111888 4682124 ~ 4682470 (+) True G25541
TU34229 lncRNA upstream 347444 4446595 ~ 4446914 (+) True G25498
TU34212 lncRNA upstream 445589 4345638 ~ 4348769 (+) True G25486
TU34213 lncRNA upstream 445589 4345752 ~ 4348769 (+) False G25486
TU34149 lncRNA upstream 978210 3815837 ~ 3816148 (+) True G25436
TU34302 lncRNA downstream 53442 4890727 ~ 4890996 (+) True G25567
TU34339 lncRNA downstream 793379 5630664 ~ 5633030 (+) True G25593
TU34365 lncRNA downstream 837081 5674366 ~ 5675988 (+) True G25611
TU34421 lncRNA downstream 1025374 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 1055436 5892721 ~ 5893025 (+) True G25673
XM_039794111.1 mRNA upstream 453070 4333065 ~ 4341288 (+) True LOC120555425
XM_039795101.1 mRNA upstream 540284 4163676 ~ 4254074 (+) True LOC120555911
XM_039795609.1 mRNA upstream 642294 3873032 ~ 4152064 (+) True LOC120556182
XM_039794600.1 mRNA upstream 1070215 3623634 ~ 3724143 (+) False mtss1lb
XM_039794564.1 mRNA downstream 804998 5642283 ~ 5654255 (+) False zgc:162297
XM_039794566.1 mRNA downstream 805270 5642555 ~ 5654255 (+) False zgc:162297
XM_039794563.1 mRNA downstream 805863 5643148 ~ 5654255 (+) True zgc:162297
XM_039794565.1 mRNA downstream 806227 5643512 ~ 5654255 (+) False zgc:162297
XM_039794571.1 mRNA downstream 822195 5659480 ~ 5672023 (+) False LOC120555666
TU34243 other upstream 218713 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1008816 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 2711039 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 2951547 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 1196924 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 1214602 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 1215530 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 1427689 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 1449763 6287048 ~ 6288077 (+) True G25743

Expression Profile