RNA id: TU34302


Basic Information

Item Value
RNA id TU34302
length 270
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G25567
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 4890727 ~ 4890996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttaaaacattagttcatattttaatttgttttacaatcgaaatctaaagtttatccaaacaataactctgtttccctggttacgcctgacggtttgactaatacctggaacaatcattcccatccatcaggttcttatgcaatgcaaacattgttctctccaccaggaattaggaagaaccttagatacgacttgcctcccttagcaaccggagatatttatatagtccgctcagctgatagaacccttcagtttagctacgagccag

Function

GO:

id name namespace
GO:0048646 anatomical structure formation involved in morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34285 lncRNA upstream 53460 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 208257 4682124 ~ 4682470 (+) True G25541
TU34229 lncRNA upstream 443813 4446595 ~ 4446914 (+) True G25498
TU34212 lncRNA upstream 541958 4345638 ~ 4348769 (+) True G25486
TU34213 lncRNA upstream 541958 4345752 ~ 4348769 (+) False G25486
TU34339 lncRNA downstream 739668 5630664 ~ 5633030 (+) True G25593
TU34365 lncRNA downstream 783370 5674366 ~ 5675988 (+) True G25611
TU34421 lncRNA downstream 971663 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 1001725 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 1020233 5911229 ~ 5912453 (+) True G25675
XM_039795582.1 mRNA upstream 53442 4793815 ~ 4837285 (+) True tshz3b
XM_039795585.1 mRNA upstream 53442 4793815 ~ 4837285 (+) False tshz3b
XM_039795583.1 mRNA upstream 53442 4794358 ~ 4837285 (+) False tshz3b
XM_039795586.1 mRNA upstream 53442 4794358 ~ 4837285 (+) False tshz3b
XM_039795581.1 mRNA upstream 53442 4795262 ~ 4837285 (+) False tshz3b
XM_039794564.1 mRNA downstream 751287 5642283 ~ 5654255 (+) False zgc:162297
XM_039794566.1 mRNA downstream 751559 5642555 ~ 5654255 (+) False zgc:162297
XM_039794563.1 mRNA downstream 752152 5643148 ~ 5654255 (+) True zgc:162297
XM_039794565.1 mRNA downstream 752516 5643512 ~ 5654255 (+) False zgc:162297
XM_039794571.1 mRNA downstream 768484 5659480 ~ 5672023 (+) False LOC120555666
TU34243 other upstream 315082 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1105185 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 2807408 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3047916 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 1143213 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 1160891 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 1161819 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 1373978 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 1396052 6287048 ~ 6288077 (+) True G25743

Expression Profile