RNA id: TU34339


Basic Information

Item Value
RNA id TU34339
length 1280
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G25593
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5630664 ~ 5633030 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcAGAAATTGTCTTTAATGGAAAATATGTagcagcattttattttaaaacatcaaaatagattTACATTTGGGTGGTGGGGAAACAAACCGCAGgttgagatttaaaaaaaaaaaaaaagttaaatacaaTCAATATTTTAGCTTCTGAAGCCTGGCTGGTTCGCTCCATTAAGGTAGCCAAGCTACTGGTCCCTACGCAAAACATGGCCATGCTTTGTCTGACAAAAATGGCGTAGAGTAGAACCATAAACAAGAGCTTCACACCATTTATTTGTGacccctctctcacacacacacgcacacacacacacgcacacacacgcattcacATTCCCCCTCCATCATGCAAAGCCCACTTTTATAGCAGCACAGAGAGCCAAATATGACCCTAGGAATAGTTTTTGGGCAAATGAGGCCACTGATATTAAAAcagcacaaatacacaaacacacacactctaaatcAAGTAGAGAAACCATAAAAATGTCCATTCAATTTGGCCTCtgcatagaaaataaaaaacggCAACCGCGACATGTAGGTTTGGTTGGTAATTAATGCGAGCATTATGGCACAAGGCTATTCAAAAAGACATATCTCTTGAGCCGTCCCATCCCTTAGCTTTGCGATTTCATCTAAACTGAAGGTTTAAATAGGTAAGATTCCTGTGGGGGGCTATCCTCACCATTTGTCAGCGTTTTCCCCCCCAATTTAGTCGAAGCCCCTGTGTGTAAACACCCACTACAGAGACATTTAAAAGCATCTGGATCCAAGTAATCACCGTGACTTGGGAGAAAATACCATTTCAAATCAATGATTCCCCGCTGAAAATCCATCTGCAGTGTCAACACAATGGAGTTGCTTTTCTTCCTCTTACAGCTAGAATGTTAAAAATCTAATTCGCAATTTCTGTCGTCTTGTCAGTTTCAGTGTTTGCTTCACTACTTTGGAGGCGGCATTGCGGGGATGGAGTACGAATCCTGGGCCTGATTTTCAGCACTGCGGTATCCAATCGGACCAACTCTTCAGTTTTCTCACTGCTCTGCGGGGGAGTCAGGACGCCGGAAGGTACCGGACAGTTGCCGTGTTGCTTCAAATCTGCATCCTGGTAAGAGCCGGCCTTGTCCCCATGTAATGTAGGAGGCATGTGTCTGGATGTTGTGCATGTCATCTGCAGGGATTCCTGTGAACGTCTTCATGGACGAGCCACCGACCTCCCGCAGCGCCATGGCGAATGGCACCATCCACCTCACACACGCCTCTACCTCCACCCTCTTCA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34302 lncRNA upstream 739668 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 793397 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 948194 4682124 ~ 4682470 (+) True G25541
TU34229 lncRNA upstream 1183750 4446595 ~ 4446914 (+) True G25498
TU34212 lncRNA upstream 1281895 4345638 ~ 4348769 (+) True G25486
TU34365 lncRNA downstream 41336 5674366 ~ 5675988 (+) True G25611
TU34421 lncRNA downstream 229629 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 259691 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 278199 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 402426 6035456 ~ 6035789 (+) True G25709
XM_039795585.1 mRNA upstream 793379 4793815 ~ 4837285 (+) False tshz3b
XM_039794564.1 mRNA downstream 9253 5642283 ~ 5654255 (+) False zgc:162297
XM_039794566.1 mRNA downstream 9525 5642555 ~ 5654255 (+) False zgc:162297
XM_039794563.1 mRNA downstream 10118 5643148 ~ 5654255 (+) True zgc:162297
XM_039794565.1 mRNA downstream 10482 5643512 ~ 5654255 (+) False zgc:162297
XM_039794571.1 mRNA downstream 26450 5659480 ~ 5672023 (+) False LOC120555666
TU34243 other upstream 1055019 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1845122 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3547345 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3787853 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 401179 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 418857 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 419785 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 631944 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 654018 6287048 ~ 6288077 (+) True G25743

Expression Profile