RNA id: TCONS_00073337


Basic Information

Item Value
RNA id TCONS_00073337
length 1749
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_037263
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33154841 ~ 33169215 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAAAACTGTcgatttgtttaaattcatatgGTTATTTGGCACGAGATCCAGTGATCTGTCGACCATCCTGTTTTGCTGCAGTGGACAGATGCTGAGCATGCTGGGACATGACTGAGGCGTGATGGATCCAGAAGAAGCCGAGCTTCAGAATGACTACCGTTACCGAAGTTATGCAGCTGTCATTGAGAAGGCGCTGCGAAACTTTGAGTCATCTAGTGAATGGGCCGATCTCATCTCCTCACTGGGAAAACTCAACAAGGCTCTCCAGAGTAATCTAAAGTACTCTCTGTTACCGCGCCGGCTGATCATCGGGAAGCGTCTTGCTCAGTGTTTGCATCCTGCCCTGCCCAGCGGCGTCCATCTCAAAGCACTTGAGACCTATGAGGTCATCTTTAAAATCATTGGCACAAAATGGCTTGCGAAGGATCTCTTTATATACAGCTCAGGCCTGTTCCCATTGCTGGGTCATGCAGCGATGTCTGTGAAACCCGTCCTCTTGACTCTGTACGAGAGGTACTTCCTGCCCCTTCAGAGGGCACTGCTACCCAGCCTGCAGGCCTTTATTATGGGCTTGCTGCCTGGACTGGAGGAGGGAGCGGAGGTCTATGACAGGACGGATGCGTTGCTTGTGAAGCTGTCAGTGTTGGTGGGTCAGTCTGTGTTTTATGGGGCGCTGTGGGGTTCAGTGCTGATTTGTCCTCTGGTGCGGCTGCCAGCTTCACTCTTCATCGTTGCACATTTCGACCACTCAATCACAGCTAAAGAACAGAAATTTATGCTTGGGACAGATCACAGACTAGTGGTGAAAGCTGTTTGTCTTGCTTTACAAGACTCTAATGTTCTGGTCCAGAGGAACACGCTGGAAATTCTTCTCTACTTCTTCCCCTTCACGACCTTCCAGGATCCTGGCGAGTGTGcaattccattaaaacaagaTGAGATGATCAGTGTTGTGTCTGCTGCCTCGCTCACACTGCTCAGGAGAGACATGTCTCTCAACCGCCGCCTCTATGCATGGATGCTTGGCTTGGACATTAAAGGAGGAATGGGGGCTGCAGACTCCAGTCACTACAGCACTGTGGAGGAATACACTGCATTCTACTTCAATACACACTCCAGAGAATTATTGGTGCAGGCTCTGGTGAATATTCTGAAGCAGAAAGATATCGAGGCCAACCCTGACAACCTGATAGATTATCTCAGGCCGTTTCGCATCATCATTAGCCTGCTGGACAAATCAGAGATAGGGCCCTTGGTGTTGTCTGATGTGTTGCTGGAGGTGGTCAGAGCattttacagctactgtatagcGATGCTGGGAGACAACGGTAACAACACCAGCCTCACTGGCAGCCAACTCAACAGTAAAATCAAGGAGAATAAGAACTCCTCTGAGATAATAAAGACCGTCAATATGCTTGTGAGTGCCATGAGCAGTAATTTTCTCTGGGACTACATGACAAGGCACTTCCAAATCTGTCTCAGctcacTGAGAGATCCAGTTGAAAAGAGTCCATCTAAATCCTGGAGCAGCCCTCCTTCAGTGACTGAACTCTCCACGCTTATTATCTTCTTGCTGGATGTTATTCCTTTGgaaCTCTACGCAGAGATTCAAACACAATACCTGCCACAGATGTTGGGCAACATGTTGCAGTCGCTACAAAGTCACATGACTTCTCTCAGCTTATCAGAACTCACGCAGGCCATGAGGGCGTGTTTTAAAGTGCTCAGTAAGATACAGATGCCG

Function

GO:

id name namespace
GO:0006895 Golgi to endosome transport biological_process
GO:0005768 endosome cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1195 Predicted to act upstream of or within Golgi to endosome transport and protein transport. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1B (DOP1 leucine zipper like protein B).

Ensembl:

ensembl_id ENSDART00000132465

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073336 lncRNA upstream 7177 33146072 ~ 33147664 (+) True XLOC_037262
TCONS_00073335 lncRNA upstream 7834 33145585 ~ 33147007 (+) False XLOC_037262
TCONS_00075156 lncRNA upstream 259741 32891897 ~ 32895100 (+) True XLOC_037257
TCONS_00073321 lncRNA upstream 503404 32649076 ~ 32651437 (+) False XLOC_037255
TCONS_00073325 lncRNA upstream 504737 32649507 ~ 32650104 (+) True XLOC_037255
TCONS_00075157 lncRNA downstream 557468 33726683 ~ 33742935 (+) False XLOC_037276
TCONS_00075158 lncRNA downstream 557479 33726694 ~ 33742935 (+) False XLOC_037276
TCONS_00075159 lncRNA downstream 557483 33726698 ~ 33742935 (+) False XLOC_037276
TCONS_00075160 lncRNA downstream 557499 33726714 ~ 33764177 (+) False XLOC_037276
TCONS_00075161 lncRNA downstream 563946 33733161 ~ 33752405 (+) True XLOC_037276
TCONS_00073334 mRNA upstream 5968 33145522 ~ 33148873 (+) False XLOC_037262
TCONS_00073332 mRNA upstream 99401 33009284 ~ 33055440 (+) True XLOC_037260
TCONS_00073331 mRNA upstream 173181 32978302 ~ 32981660 (+) True XLOC_037259
TCONS_00073329 mRNA upstream 208402 32930622 ~ 32946439 (+) False XLOC_037258
TCONS_00073330 mRNA upstream 213225 32931625 ~ 32941616 (+) True XLOC_037258
TCONS_00073339 mRNA downstream 4849 33174064 ~ 33195586 (+) False XLOC_037264
TCONS_00073340 mRNA downstream 4978 33174193 ~ 33187569 (+) False XLOC_037264
TCONS_00073342 mRNA downstream 38359 33207574 ~ 33209659 (+) False XLOC_037265
TCONS_00073343 mRNA downstream 38470 33207685 ~ 33209538 (+) True XLOC_037265
TCONS_00073344 mRNA downstream 47730 33216945 ~ 33218269 (+) False XLOC_037266
TCONS_00073333 other upstream 72660 33074680 ~ 33082181 (+) True XLOC_037261
TCONS_00073322 other upstream 502769 32649076 ~ 32652072 (+) False XLOC_037255
TCONS_00073307 other upstream 967589 32184055 ~ 32187252 (+) True XLOC_037247
TCONS_00073304 other upstream 1051034 32100203 ~ 32103807 (+) True XLOC_037246
TCONS_00073294 other upstream 1161408 31993311 ~ 31993433 (+) True XLOC_037244
TCONS_00073341 other downstream 11467 33180682 ~ 33181352 (+) True XLOC_037264
TCONS_00073351 other downstream 74983 33244198 ~ 33245755 (+) True XLOC_037270
TCONS_00073362 other downstream 641231 33810446 ~ 33836470 (+) True XLOC_037278
TCONS_00073383 other downstream 1256513 34425728 ~ 34429112 (+) False XLOC_037290
TCONS_00073385 other downstream 1256560 34425775 ~ 34429120 (+) False XLOC_037290

Expression Profile

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