RNA id: TU34365


Basic Information

Item Value
RNA id TU34365
length 277
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G25611
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5674366 ~ 5675988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccatgatcactctggatgaactgcagagatctacagctgagctgggagactctgtccataggacaacaatcagtcgtatactgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccaaaagccacctgggagacacaccaaacatgtggaagaaggtgctgtggtcagatgaaaccaaaatcgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34339 lncRNA upstream 41336 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 783370 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 837099 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 991896 4682124 ~ 4682470 (+) True G25541
TU34229 lncRNA upstream 1227452 4446595 ~ 4446914 (+) True G25498
TU34421 lncRNA downstream 186671 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 216733 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 235241 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 359468 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 360871 6036859 ~ 6037969 (+) True G25710
XM_039794571.1 mRNA upstream 2343 5659480 ~ 5672023 (+) False LOC120555666
XM_039794570.1 mRNA upstream 2343 5663719 ~ 5672023 (+) True LOC120555666
XM_039794564.1 mRNA upstream 20111 5642283 ~ 5654255 (+) False zgc:162297
XM_039794566.1 mRNA upstream 20111 5642555 ~ 5654255 (+) False zgc:162297
XM_039794563.1 mRNA upstream 20111 5643148 ~ 5654255 (+) True zgc:162297
XM_039796036.1 mRNA downstream 57302 5733290 ~ 5758249 (+) True LOC120556426
XM_039796037.1 mRNA downstream 88555 5764543 ~ 5804822 (+) True LOC120556427
XM_039795269.1 mRNA downstream 140046 5816034 ~ 5854489 (+) True LOC120555999
XM_039795538.1 mRNA downstream 193067 5869055 ~ 5884023 (+) True zgc:153993
XM_039795087.1 mRNA downstream 241568 5917556 ~ 6021420 (+) False ano1a
TU34243 other upstream 1098721 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1888824 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3591047 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3831555 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 358221 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 375899 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 376827 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 588986 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 611060 6287048 ~ 6288077 (+) True G25743

Expression Profile