RNA id: TU34402


Basic Information

Item Value
RNA id TU34402
length 3706
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G25644
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5800797 ~ 5807098 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttgtttatttgtaaaatacatttaatcCCTTTATATTTGGGCAAACCAAAAAGTCTAGAAGAGCAGAGAGGGGGGTCGAGATGGAAGTGGCAGTGGGTCCTGAGTGTCGCTTCCCAAATGAAAGAGGCATCAACATGGACAGCTAGTTCTCTCACCATCTGGGGAACACTGGACTGCTGATTGACTCCTCAGTCTCCACTGCCACAACCCCCTTCTGTCCAGACTCCATTGACGACGTACCAAACACAGATATCACAAtacaaggagagaaaaaaaaggcatacATTGTCTATCTACATCCTTCATGATTTTCGTTAGTACGTCAGAGCTGTAAATATTACAAGAcacttttactgtttttttctcGGTTTAAGTAGACGTTAACAGGCTAAGGTTTTTAGTTGGTTGACAAAAGCGGTGATAACATGAAAGGGGACGCAAGATGATATGACTTCATTAGAGTGTTTATGATGCGTGGAACGGTTGTGTGTTAGTATCAGCGGCAGCAGGGTCTAGTAACAACAGactttaaaagaaatatttccCAAGCCTCCGTGCTCAGCTGCCAGGTGGGAGCGTTCTGATCGGCGGAACCTTGAGCAGGCAGTTTAAGACTGATTTGCGGTCAACACGGTATCTGTTAATGCGACTGCGCTGCCCTATACCAATACCAGTACAAATATTACCACATTAATCAGCCAGAGACAgtcaaaaaaacacacttaaagGACGCAGACACAAACTCACGACCACCAGTAAAAAACCTAACGCAGTCGGCAACGACAGCCCTGACGTGGATTTGTGAGACTGACAAATGTAATAATATGGGAGTCGAACACGACTTGGGTTAGGTTTtaattacaagacaccacaagtTGTGGTTTTAAGGGGAACTATGTGCTGGAACTATTTCTTCTCCAGGCGTTTGGACTTCCATGAGCctctgctggttgcctggcatCGCCAAGGACTTACCGAATGGATTCGATTCCGACTCACAAGGTCCCGGTTTCGATTACATTTCTGATTCAATTTAATGTCAATAACGGTTAGGGAAATTccagttacaataccaatttagcttggatataaaagagattatCAGATGCTGaaaattgtacaagcaagaagcaaccctcaaataattttttttataacgcACCGGATTGTTACGTTAAGAATTGTCCCCCAAAAACGTTGGTGGTGggttatacatccatggtgaaaaGGCATATATTAAAAGATTGATTTCGGCATTTTAATAGTCAatatcagatcactcaaactaagtttttttttaaattggaatATCGATTATTTGAACCCAGCCCTAAACGAGACTCCACATCTCTTCACTCTTCTTTAACCATTGCTAGTTTTTTCagggaattattttttttcggCAGGAATGGGCCTCCGTACATCATGATTTGACTGCACTGGTGTTCATGATATTGTGTCCGCCCCTGTTCTGTATGTGCACACAAATACACGAGCTCAAACGGTTTTTGGTGGTGCATACAGGGCCAAACCAACAGCATAGTAACGTAAGCAGGAGGGCAAACAGCTGGCTGACTCAGCCCTGCATCAGGGACAGTTACTACAGCAACGGTGTCAACCAGAAGAGGTTAGTGGGCTGTGAAGCCagaggaggggggtgggggtgggggagtACATTAATGACACAATCAGGCCAGATAAGGCAGGGCTAGACTCAACCAGACAAGGCAACGCCAGATTGATTCAGAACGCCAAAGCAAGGCTCTTCCTGCTGCTACAACGGCCACAGGCTGGACTCGCACCATGGGTTTCCTCTACGAGCCTGCAGAGCTGAGCGACCGGGGCCCAGCTGGCTGAAGTTAACAGTTGACGGTTAACAAGCACACCATCAATACTATGGATGCAACAGGAGTGTCAGTCACACCGACATCAGCCAACTTGCTCTAGGTGTAAGCTCTATGGGTCATATTTCAATTTGATCCCTCCGATTTGGGAGAGATGGTCATAGCGTTAAGCAAGTCGCCTCCACAAATAAGTGCACAGTTGTATAAAACCGTTAAAAGTTTTTCTCTTTTAGATCTATCttaatgttttgttattttttaacttgCATACAGAGTACACCAAAATGGGTTTCTGGAAATATTTCGTATATAACGTGctgaaataattaataatgattTCTCAGCCCAGCAAAAAGCCTGGTAACGTGTCTGCTCCTGCTTCTCCTGTTGTGGTCTGGAGAAAATCACATCATACAAAAAGATTTTGCTCAATATTCAGAATGAATAGTGCTGCCTTTTTTGCGTTTTAACCACCCAATTGAACATTTTTTGACAAAATACGAGATGTAGGTGGTGGAACTATGCCAAAATAGCCTAGagacatttgtgtgtttttagatGAATATAAAGTATGGTTTATAAGACCATTACTTATTTCTAGGGCTGcagctgttgattattttctcaattagttgtttggtctttaaaatggtgaaaaatgttgtttcctgaagcccaagatgacgtcctcaaatctCTCgctttgtccacaactcagagatgttcagtttactgtcacagaggagagaagaaaactagaacatattcacttTTAAGACGCTGCGATCAGAGAACTGTGACTTTCTTTTTTCATGAAAGAATGACTCAAAACGATGAATTATCAAAAGAGTTGGGGATTAATTTGACAGTTGAccactaatcgattaatcgtcgCGGCTGTCCTTAATTCAAcgttatgcaacttcatttttgtCCAAGGAAATCTTAAAGAACACTACTGAGGGGAAACACCTTCCTCATAGGTTTTATACAACTGAGCGCTCAAGACAGCGTTGGAGACACGATGAACGACAAACAGCCAaagacaaaccaacaaaataacTCCATGGGGGCCAACGTGACGGACATCTGGTCACTTTGACTTTGGTTCCAGCTTCCGAGATTAACTGAGATTCCTTTTGTTCGACAgacatcccacagcagtgtgggTGAAAACCCGAGACAATGGTCTGTGGGGCAGGGGACGCCATCATCTGGTTCAGTCTAGAGCAAAGACAAACAAGCAGAGAGTGCAGGAAGAATACAGGAGAAAGACCTACTGTAATACAATTTTCATGCTTAGGCAGTCATAAAGCactgttaatatatatatttatatacagtttatacatcaaacagtgaaaaataaaaataaaaatacatgttCATAGGCAAAGGGAGCAGTAAAACAACTAATGCGTCACTAAAGGATTAGAGCACCAACTGGTGAATGGCATTCATGTGTGACCGTGTGATATAATATCTACATATCAGGTTAGGATAGCACTGGTCAAATATGCATAACAGCATCTGTGACTAACGAAACAAAAGAATTGACAgttgtaatataaaaaaaaaaaaaaagaaatgctcaaTGGAGGATGGTTTTTACGTTGGTCTTCTCAAAGAGCTGACTAAATCCAGCAAGCAATATATGTGACGTGTTCCTgcttataaaagaaaaagaaaagaaaaaaagaaagagacggagacggagacgTCGTCCTTCCTTCATTTGGCGAGCGTCGCTTTAGTACACCGGGCTGTTGCGGATCCCGCAGCACAACACCATGCTGAAGATCATCTCGAACATAATAACTGCAACCACCAGAGCGGCGATACCAATCAGGTAGATCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34393 lncRNA downstream 46220 5755510 ~ 5756425 (-) True G25637
TU34388 lncRNA downstream 120949 5680042 ~ 5681696 (-) False LOC120556425
TU34366 lncRNA downstream 126348 5674360 ~ 5676297 (-) True G25612
TU34355 lncRNA downstream 143613 5625733 ~ 5659032 (-) True G25603
TU34338 lncRNA downstream 176986 5625456 ~ 5625659 (-) True G25592
TU34404 lncRNA upstream 7381 5814479 ~ 5814684 (-) True G25646
TU34427 lncRNA upstream 69155 5876253 ~ 5878018 (-) True G25667
TU34432 lncRNA upstream 77746 5884844 ~ 5885161 (-) True G25672
TU34434 lncRNA upstream 98258 5905356 ~ 5905667 (-) True G25674
XR_005638728.1 lncRNA upstream 315949 6123047 ~ 6125990 (-) False LOC120555539
XM_039796034.1 mRNA downstream 85212 5680622 ~ 5717433 (-) False LOC120556425
XM_039796033.1 mRNA downstream 85213 5682186 ~ 5717432 (-) True LOC120556425
XM_039794569.1 mRNA downstream 139391 5653454 ~ 5663254 (-) False si:ch211-260e23.9
XM_039794567.1 mRNA downstream 139423 5653454 ~ 5663222 (-) True si:ch211-260e23.9
XM_039794568.1 mRNA downstream 139434 5653454 ~ 5663211 (-) False si:ch211-260e23.9
XM_039794276.1 mRNA upstream 231327 6038425 ~ 6050689 (-) True LOC120555531
XM_039794277.1 mRNA upstream 231327 6038425 ~ 6050582 (-) False LOC120555531
XM_039794275.1 mRNA upstream 253520 6060618 ~ 6067226 (-) True LOC120555530
XM_039794274.1 mRNA upstream 263502 6070600 ~ 6079167 (-) True LOC120555529
XM_039794279.1 mRNA upstream 307113 6114211 ~ 6126128 (-) True LOC120555532
TU33895 other downstream 3525554 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 3526636 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 3969251 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638786.1 other downstream 4160297 1588886 ~ 1642348 (-) False LOC120556047
TU33668 other downstream 4345554 1431968 ~ 1457091 (-) False LOC120555898
XR_005638726.1 other upstream 349124 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 835348 6642446 ~ 6644606 (-) False dok4
XR_005638761.1 other upstream 1525686 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 2337109 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 3045689 8852787 ~ 8979076 (-) False LOC120555589

Expression Profile