RNA id: TU34435


Basic Information

Item Value
RNA id TU34435
length 1225
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G25675
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5911229 ~ 5912453 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTTGTAGCCATGCCCttgtgtttcctccctgtgccttgtgtctgtttctgcgtcagtttattgttttgtgagttttccagtCCCTGTACTGCCGCTTTTTGTTGATATTAAATTCCTGAGTACCACCATCTCCTGCCTGTCTGCcgcctgcatttgggtcctcatCCTCCTGCTACACACAACAGTTTAAGTCGtgcagaaaactcagattggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcagctaaccatagtcctcataaatccaccggagtttacaattccaacacaaaagtgacaggaaacggacatcggcgaaaatacatgcactatgtaacttttagcgtGAGCTGtggttccaatgagacaacctgtagggggaccgaagcaggaaaagttacatagtgttgcttcaAAATACCAagacaaagaaagcggaaggaaacggacatcgccGAAAAGACATatatccggcagaatttcctgcggcaacggagcaatcccggaagtggaacgttgtggatatagactacagtaGCGTTAACAGTtgtagaaatgaaaaaaaacatctcagaTATTATCAACATACTATTAGAACCAGAACCTTTACTGATTGTCCTTGGAACTTCTGGAAGAATAAGAAAACTCACCAAGTTCCAGCAACAACTCCTTTCTTACTGTTTCATCACAGCATAAAATATGACTCTTGATGCAACAGGACCTGACTAGTACATTACATCTGGAAAGGATAAGATATGTCATGGACAAACTAGCACAATACAGTAAGACTTGGCAGCCCTTTGTGGTGTACCTGTCACAGTGAAAGTTGTagaatacacatacacactgttgTGTCTCTTTAGGGAGTTGGATGAGTACTAGGTTGAGCAATAGGAAGGGTAAGAGGAAATAAAgatctcttgtgtttttttcatgtttcatgtttgTTTAAATTCTGTATTGTTGTACCAAATGTTCTGTATACAGATTAAAGATTGTAATCTTACTTTCAATTCCCTACAAAAATGAGCACTCATTTGACTATCTTAATGTCTGTAAAATAATCTTTGGCTCAATAAAAAACATtctgataaaaagaagaaaaaaaacagttgtaGAAATGGTAGTATTAGTATAAGCATAGTGCCATAAGATATTTTCTGGGTGTGCACAAATATGCTCCAACATTGGCGATAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34433 lncRNA upstream 18204 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 48362 5862659 ~ 5862867 (+) True G25663
TU34365 lncRNA upstream 235241 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 278199 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 1020233 4890727 ~ 4890996 (+) True G25567
TU34492 lncRNA downstream 123003 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 124406 6036859 ~ 6037969 (+) True G25710
TU34500 lncRNA downstream 366248 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 478146 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 515605 6428058 ~ 6428260 (+) True G25797
XM_039795538.1 mRNA upstream 27206 5869055 ~ 5884023 (+) True zgc:153993
XM_039795269.1 mRNA upstream 56740 5816034 ~ 5854489 (+) True LOC120555999
XM_039796037.1 mRNA upstream 106407 5764543 ~ 5804822 (+) True LOC120556427
XM_039796036.1 mRNA upstream 152980 5733290 ~ 5758249 (+) True LOC120556426
XM_039794570.1 mRNA upstream 239206 5663719 ~ 5672023 (+) True LOC120555666
XM_039795087.1 mRNA downstream 5103 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA downstream 5120 5917573 ~ 6021420 (+) False ano1a
XM_039795080.1 mRNA downstream 6302 5918755 ~ 6021420 (+) True ano1a
XM_039795083.1 mRNA downstream 6302 5918755 ~ 6021420 (+) False ano1a
XM_039795082.1 mRNA downstream 6302 5918755 ~ 6021420 (+) False ano1a
TU34243 other upstream 1335584 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2125687 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3827910 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 4068418 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 121756 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 139434 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 140362 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 352521 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 374595 6287048 ~ 6288077 (+) True G25743

Expression Profile