RNA id: TU34491



Basic Information


Item Value
RNA id TU34491
length 985
RNA type TUCP
GC content 0.41
exon number 1
gene id G25708
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6034209 ~ 6035193 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cgaacattttaaatgttattttttacatCTAAGAGTTagaattagaagtgtatgctatttgcacccctggtacaaatatcaatgtatgctatttgcacccctgtgcatttacagtaccttggcatatatttacacacagttatccatactactcatgtattacacctttttggaatattatcgccctgacattcttaccctaaccataaccatcccactcctcttgcctaaacctaaccaacccaaccagagcaggcatattcatgaaaataaaaaatacgcgttcgcgggtcctgacttgcgcaattgcatgcaaattagcAAATtatccaaatttaaaaaaaataagatcaccacACAGGGGAATCGAAAAccaaactcccataccaaaggcaagcgcactaaccactcacctagcaattctttcaggaaattgaacaactttttaccacttggtttcttcaagcctcggttgctaggtaaccatactgtatacaaaacaataggtactaactaacaaactaacggttgtatgctttcactgaagacagaaagcgcaactgtagtatccattttccgctagaaattcaattgttataaactttagagacaaaacttccctaatatgccagtttctgcggtcatggaagatgaacgtccgccatgatttcggtgcacgcgagcaacgttttttttgttgttacgtcacagggtgtaaatagctcagctgtgtggccgaggctattcgtacctggggtgcaaatagacactccgtttcggatatcaattgaatgtatttttgtgaatgtcagagttaggaggaggctagctagctctcattgatggactccatctcaccgcggctctatcaatgagactcgcggacatgaggcgtttatttccccaattgtttgtttaaataactcaacacacattcccattataagattaactggaacctgcgggctgcggtaaaagattgcgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34435 lncRNA upstream 121756 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 141184 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 171342 5862659 ~ 5862867 (+) True G25663
TU34365 lncRNA upstream 358221 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 401179 5630664 ~ 5633030 (+) True G25593
TU34492 lncRNA downstream 263 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 1666 6036859 ~ 6037969 (+) True G25710
TU34500 lncRNA downstream 243508 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 355406 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 392865 6428058 ~ 6428260 (+) True G25797
XM_039794097.1 mRNA upstream 2055 6026435 ~ 6032154 (+) True fadd
XM_039795087.1 mRNA upstream 12789 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA upstream 12789 5917573 ~ 6021420 (+) False ano1a
XM_039795080.1 mRNA upstream 12789 5918755 ~ 6021420 (+) True ano1a
XM_039795083.1 mRNA upstream 12789 5918755 ~ 6021420 (+) False ano1a
XM_039794284.1 mRNA downstream 227217 6262410 ~ 6266708 (+) False LOC120555541
XM_039795724.1 mRNA downstream 259904 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 347377 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 347378 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 458744 6493937 ~ 6495721 (+) True LOC120555501
TU34243 other upstream 1458564 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2248667 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3950890 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 4191398 1839333 ~ 1842811 (+) True G25173
unassigned_transcript_138 other downstream 16694 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 17622 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 229781 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 251855 6287048 ~ 6288077 (+) True G25743
TU34538 other downstream 252997 6288190 ~ 6289776 (+) False LOC120555541

Expression Profile