RNA id: TU34492


Basic Information

Item Value
RNA id TU34492
length 334
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G25709
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6035456 ~ 6035789 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcctatgtaaatattggggcgtgactgttctcttaaggttctgGATTTTGAGACGCCTTGCGTAAGCAACCTcggctttgttgggattcgcccgttttcagcggcagtttcaaaatatgagattttcatagtaaaggggtgtcagtgggactttgagcttctatgtatgtcctatttacccaccgaactgtcgttattcaactatgacagggtaaaatcggttttgcattctatcacccctttaaaagagGATAGAGACAGGCAAATTCTCAAAAGGATTGCGCAGCATTTGCAACCGCTCAACCTGCACAAACAAGAAGCCGTGTgattctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34435 lncRNA upstream 123003 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 142431 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 172589 5862659 ~ 5862867 (+) True G25663
TU34365 lncRNA upstream 359468 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 402426 5630664 ~ 5633030 (+) True G25593
TU34494 lncRNA downstream 1070 6036859 ~ 6037969 (+) True G25710
TU34500 lncRNA downstream 242912 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 354810 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 392269 6428058 ~ 6428260 (+) True G25797
TU34657 lncRNA downstream 493729 6529518 ~ 6532184 (+) True G25824
XM_039794097.1 mRNA upstream 3302 6026435 ~ 6032154 (+) True fadd
XM_039795087.1 mRNA upstream 14036 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA upstream 14036 5917573 ~ 6021420 (+) False ano1a
XM_039795080.1 mRNA upstream 14036 5918755 ~ 6021420 (+) True ano1a
XM_039795083.1 mRNA upstream 14036 5918755 ~ 6021420 (+) False ano1a
XM_039794284.1 mRNA downstream 226621 6262410 ~ 6266708 (+) False LOC120555541
XM_039795724.1 mRNA downstream 259308 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 346781 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 346782 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 458148 6493937 ~ 6495721 (+) True LOC120555501
TU34491 other upstream 263 6034209 ~ 6035193 (+) True G25708
TU34243 other upstream 1459811 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2249914 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3952137 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 4192645 1839333 ~ 1842811 (+) True G25173
unassigned_transcript_138 other downstream 16098 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 17026 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 229185 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 251259 6287048 ~ 6288077 (+) True G25743
TU34538 other downstream 252401 6288190 ~ 6289776 (+) False LOC120555541

Expression Profile