RNA id: TU34539



Basic Information


Item Value
RNA id TU34539
length 951
RNA type TUCP
GC content 0.49
exon number 5
gene id LOC120555541
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6262410 ~ 6289776 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GAGCTCAGAGTGTTTcaggcagaggagctgcagtaatgGGCAGTCTGAGaaacattatgtttttatacatCAAAGCATATAAACCTATTCCAGTAGACACCGAGAatacaaatatgatgctgaaacACTAAATGTTATGTGCTATGGGATGGTAATAAGCTAAATGTTGTGTGTTGTCGGATGGTAAGAAGCTAAATGTTGTGTGCTATGGGATGGTAAGAAGCTAAATGTTGTGTGCTATGGGATGTTAAAAAGCTAAATGCTGTGTCCTATGGGATGATAAGCATAGATATTAAGAAGCTAAAAGCTGTGTGCTGTGGTCCTGGCAGCCGACCGGGAGAAGGCTATCATCACCCGTGGACTGGAgtccttctcttccttctcctgCATCTTCTTCAGGCCCACCCAAAGCGGCGACCACGAATGGCTGAGCATTGAGTCCAATAATGGCTGCTCCTCCTTCGTTGGCCGTCGTGGTGGGAAGCAGGTGGTGTCTCTGGCACGGAGTGGATGCCTTTACCATGGCACGGTGCAGCACGAGCTGCTCCACGCTCTGGGCTTCAACCATGAACATTCCCGCTCTGACAGGGACAACCACATCAGGGTTATGCTGCAAAACGTTCAATCTGGAAAGGAGCACAACTTTAGAAAGGTCGCCACCCTGAACCAGGGCACTCCCTACGATTACAACTCTGTCATGCAGTACCGCAAGAACGCCTTCTCCAAGAACAACCAGCCCACCATGGTCCCCATCCCCGACCCCAACGTGTCCTTTGGCAACGCCAAGGAGATGAGTCACAACGACAAAGTCAGGCTCAACACTCTCTACAAGTGCTAAGAAGCGTTTTCAGATGTGCTGACGATCAGAGGCTCCCTGACCAACAGAAGCTGCAGCTCTGAACTCATCAGCACAACAGCCAATGATCATTCTATAAAGTTTTTTTCATTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34494 lncRNA upstream 227005 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 229185 6035456 ~ 6035789 (+) True G25709
TU34435 lncRNA upstream 352521 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 371949 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 402107 5862659 ~ 5862867 (+) True G25663
TU34500 lncRNA downstream 11993 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 123891 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 161350 6428058 ~ 6428260 (+) True G25797
TU34657 lncRNA downstream 262810 6529518 ~ 6532184 (+) True G25824
TU34660 lncRNA downstream 323487 6590195 ~ 6590618 (+) True G25827
XM_039794097.1 mRNA upstream 232820 6026435 ~ 6032154 (+) True fadd
XM_039795083.1 mRNA upstream 243554 5918755 ~ 6021420 (+) False ano1a
XM_039795724.1 mRNA downstream 28389 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 115862 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 115863 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 227229 6493937 ~ 6495721 (+) True LOC120555501
XM_039795921.1 mRNA downstream 727248 6993956 ~ 7005678 (+) True LOC120556365
unassigned_transcript_139 other upstream 212077 6052815 ~ 6052897 (+) True trnal-uaa_1
unassigned_transcript_138 other upstream 213005 6051887 ~ 6051969 (+) True trnal-uaa
TU34491 other upstream 229781 6034209 ~ 6035193 (+) True G25708
TU34243 other upstream 1689329 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2479432 3784933 ~ 3785542 (+) True G25431
TU34546 other downstream 20340 6287048 ~ 6288077 (+) True G25743
TU34538 other downstream 21482 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other downstream 22348 6289056 ~ 6289776 (+) False LOC120555541
TU35083 other downstream 2486993 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2802021 9068729 ~ 9155343 (+) True G26236

Expression Profile