RNA id: TU34541


Basic Information

Item Value
RNA id TU34541
length 448
RNA type TUCP
GC content 0.47
exon number 3
gene id LOC120555541
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6262410 ~ 6289776 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACCATCAGTACCAAACCACGGAGCTCTGCAGATTATTGAGATCTTTCTCCAGCGGCTGGACTCCTTTCTGTCCAGAGTCAATGTGAAGACAAACcaaacaaatgtaactttaaacttaactttacttgtttttgtttgttttaaggaATGCAGCACAACTTCAATAAGATTGCCACCCTGAACCAGGGCACTCCCTACGATTACAACTCTGTCATGCAGTACCACAAGTATGCCTTCTCCAAGAACAACCAGCCCACCATGGTCCCCATCCCCAACGCCAACGTGTCCTTTGGCAACGCCAAGGAGATGAGTCGCAACGACAAAGCCAGGCTCAACACTCTCTACAAGTGCTAAGAAGCGTTTTCAGATGTGCTGACAGACGATCAGAGGCTCCCTGACCAACAGAAGATGCAGCCCTGAACTCATCAGCACAACAGCCAATGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34500 lncRNA upstream 8269 6278701 ~ 6280787 (+) True G25713
TU34494 lncRNA upstream 251087 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 253267 6035456 ~ 6035789 (+) True G25709
TU34435 lncRNA upstream 376603 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 396031 5892721 ~ 5893025 (+) True G25673
TU34614 lncRNA downstream 100823 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 138282 6428058 ~ 6428260 (+) True G25797
TU34657 lncRNA downstream 239742 6529518 ~ 6532184 (+) True G25824
TU34660 lncRNA downstream 300419 6590195 ~ 6590618 (+) True G25827
TU34687 lncRNA downstream 351674 6641450 ~ 6641983 (+) True G25850
XM_039794284.1 mRNA upstream 22348 6262410 ~ 6266708 (+) False LOC120555541
XM_039794097.1 mRNA upstream 256902 6026435 ~ 6032154 (+) True fadd
XM_039795082.1 mRNA upstream 267636 5918755 ~ 6021420 (+) False ano1a
XM_039795724.1 mRNA downstream 5321 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 92794 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 92795 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 204161 6493937 ~ 6495721 (+) True LOC120555501
XM_039795921.1 mRNA downstream 704180 6993956 ~ 7005678 (+) True LOC120556365
TU34546 other upstream 979 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 22348 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 236159 6052815 ~ 6052897 (+) True trnal-uaa_1
unassigned_transcript_138 other upstream 237087 6051887 ~ 6051969 (+) True trnal-uaa
TU34491 other upstream 253863 6034209 ~ 6035193 (+) True G25708
TU35083 other downstream 2463925 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2778953 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 3277055 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 3557501 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5741845 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile