RNA id: TU34546


Basic Information

Item Value
RNA id TU34546
length 293
RNA type TUCP
GC content 0.57
exon number 3
gene id G25743
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6287048 ~ 6288077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccAACAGTAATCTGATCCGGTCTGACAATGATCCCATCCTGACTGGAGGAGACATCGCCATCGGCAGTGAGGACGAGAGAAACGCTGACCCCTGCACCAGCCGAGGCTGCATGTGGGGCAAAAACGCTGACGGGAAGGTCTACGTTCCTTATTACATCACCAACCACTTCTCCGACCGGGAGAAGGCCATCATCACCCGTGGACTGGAgtccttctcttccttctcctgCATCCGCTTCAGGCCAAGCAGAAGCAGCGACCGCGACTGGCTGAGCATCGAGTCCCAGAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34500 lncRNA upstream 6261 6278701 ~ 6280787 (+) True G25713
TU34494 lncRNA upstream 249079 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 251259 6035456 ~ 6035789 (+) True G25709
TU34435 lncRNA upstream 374595 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 394023 5892721 ~ 5893025 (+) True G25673
TU34614 lncRNA downstream 102522 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 139981 6428058 ~ 6428260 (+) True G25797
TU34657 lncRNA downstream 241441 6529518 ~ 6532184 (+) True G25824
TU34660 lncRNA downstream 302118 6590195 ~ 6590618 (+) True G25827
TU34687 lncRNA downstream 353373 6641450 ~ 6641983 (+) True G25850
XM_039794284.1 mRNA upstream 20340 6262410 ~ 6266708 (+) False LOC120555541
XM_039794097.1 mRNA upstream 254894 6026435 ~ 6032154 (+) True fadd
XM_039795083.1 mRNA upstream 265628 5918755 ~ 6021420 (+) False ano1a
XM_039795724.1 mRNA downstream 7020 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 94493 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 94494 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 205860 6493937 ~ 6495721 (+) True LOC120555501
XM_039795921.1 mRNA downstream 705879 6993956 ~ 7005678 (+) True LOC120556365
TU34539 other upstream 20340 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 234151 6052815 ~ 6052897 (+) True trnal-uaa_1
unassigned_transcript_138 other upstream 235079 6051887 ~ 6051969 (+) True trnal-uaa
TU34491 other upstream 251855 6034209 ~ 6035193 (+) True G25708
TU34243 other upstream 1711403 4570373 ~ 4575645 (+) True G25512
TU34538 other downstream 113 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other downstream 979 6289056 ~ 6289776 (+) False LOC120555541
TU35083 other downstream 2465624 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2780652 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 3278754 9566831 ~ 9604436 (+) False adamts17

Expression Profile