RNA id: TU34657


Basic Information

Item Value
RNA id TU34657
length 2667
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G25824
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6529518 ~ 6532184 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACAAGCTGAAAAAATTGCATTCCAACTTCCCTATACATCCAAACCTTTCAATAAAAATCATTCCCCTGTTTTTTTCTACAAATAAACCACATttgaactttatttatatacataCCAAGGCACACTTTGGCTTTGAATAAAATCTAGAaatcttgtttaaaaaaaaaaaaagagatgtgaATGCTTTATGGCAGATACCCCTCTTCAAAGTCAGAtcaaatctgtttgtttttacggagctattttttttatacgCCATCAGTAGAGGGATGGTAATGCAGCCTCACCAGCACCACAAATACTCCCAGAATATTAGCCCCATTCACACATGCATGTCTCTCCCTTTATGTTCTGGAAATTAGACATATTGGTGTCTCAGGTGTGAGTATAATATAtgaacagatacacaaagctCTATGTTCTGAGACATAGTATATGTTGAGTATATATGCTGTATATGGATGgttctaaaaaaaacattacacataCATTTACTTTCACCAAGGAGCTTTTGATTTTGGTTCTAATAGTTAGCAGGTTGTCTCAAAAACCTACGATAATagtaattttttattaattttaataaaaatttttatttatatagcgcctttcatgaaaccTAAGGACGCTTTACATTATTACAGTGGCTATACTAAtggaggttgtaggctgtggtaaaCAAGTGGAGTTTcaggagtcttttttttttttaaatgtccagggatgtagcatttcggatatctgcagggagggtgttTCCCggagggatggggctgcaacactaagGCTCTGTCTCCAAAAGTACAGAGTCTGGGgtggggaatggagagcaggccagcgtctgaggaccgcaggtttcgggttggggtgtatggatggaggaggtcagAGAGTAAGATAAGTGTAATTtcaaattattatttcattatttaaaattgtgtgtgtgtgtgtgtgtggtaagtaaGGCCAGTGgctcccaacctttttggtctgAGGTCCCCTCACAGCCCTATCAGATGAACTCACGTACCCCGTTATCACTTCCCAATGTATGTCCCAAATGTATAACactattcattatataaaagtggaTACTGTTCAATTTTCTTGTAAGATTGAACTTTCATTAttaaggttggtttggtcagcaatcCTAGTACTACTAGTCTACAAGGCTGCTACTACTTGGGGGGTAGTCTCGGATAGCCAGACCAGTCTGGCTAGTCcccacagcattctgggattggagaaaaacgcgctctggtttattggcatttctttaaactaatcacactcgtcttgggcggtgctaagcgccggacagagcaacagggcctctgcaaaatagcctctggaaggaacctgttttggtggaacatgttcaaaagttgttttagtcgtgcaacagaaacaggaaactcagattggacagatagtctagctaactgtctggatttaccctgcagagatctgaggagcatttaaacatagtcctcataaatccaccgggttcagaacgccaacacaaaggaagcggaagaaaaaaaaaagggtgaggctatttgcacccctggtacaattagcagtgtatgctattcgtaacctggtgcaattagaaattaatgctattcgtaccccaccggtgcacacagcaatgtgttctattaataccccgtctggtacaaatatcaatgttatttgcacccctgtgcatttacagtaccttggcatatatttacacacagttatccatactactcatgtattacacctttttggaatattatcgccctgacattgattcttaccctaaccataaccaatcccactcctcttgcctaaacctaaccaacccaaccagagcaggcatattcatgagtctttccctaccaccctgcaaaaaaagtTCGCGTTCGCGGAAGTGCATGCAAATGAtctaatccaaaatgaaaaatcaAGACCACCTCAGCAGGGAATCAAACTCCAAACTCCCAGACCAAAGCGCAGtgttctaaccactcacctagcagttcttacagcatgttgtacaactgtttaccacttggtgtcttcaagcctcggttgctaggtaaccatgctgtatacaaaaaataggtactaactaacaaactaactgttgaatgctttcactgaagacggAAAgtgcaactgtagtatccattttccgctagaaattcaattgttataaactttagagacaaaactttcctaatatgccagtttctgtggtcatggaagatgaacgtccgccatgatttcggtgcacgcgatcaatgtgtttttgttgttacatcACAGGGTGTGAagagctcagctgtgtggccgaggctattcgtaccgggggtgcaaatagacactcaaaaaaaaaaaaaaacacatccgaCGGACTTTTTGATATATCCTACTGAATGAAGGTTTTAATTGTTTGTCCATTAGTTTTAGCtaatcatttgaactgtttaatcATCTATGTCGAAGATATATTAATTACTTTTAGCAAACATTCTGTGCTGGCTTGCTAACTAGTTTTGGCCAGGCTGACTTAATGTTAATATGTggatatattctttttttaatcaaatcatattttcaatttcttttttcaaatgagTTGAGCTACTCTTCAATTTTCCACGTACCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34627 lncRNA upstream 101258 6428058 ~ 6428260 (+) True G25797
TU34614 lncRNA upstream 133812 6390599 ~ 6395706 (+) True rwdd3
TU34500 lncRNA upstream 248731 6278701 ~ 6280787 (+) True G25713
TU34494 lncRNA upstream 491549 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 493729 6035456 ~ 6035789 (+) True G25709
TU34660 lncRNA downstream 58011 6590195 ~ 6590618 (+) True G25827
TU34687 lncRNA downstream 109266 6641450 ~ 6641983 (+) True G25850
TU34729 lncRNA downstream 442151 6974335 ~ 6979755 (+) True G25888
TU34737 lncRNA downstream 455328 6987512 ~ 6991931 (+) True G25893
TU34739 lncRNA downstream 460811 6992995 ~ 6993204 (+) True G25895
XM_039794210.1 mRNA upstream 33797 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 134714 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 134716 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 218378 6295097 ~ 6311140 (+) True mtch2
XM_039794284.1 mRNA upstream 262810 6262410 ~ 6266708 (+) False LOC120555541
XM_039795921.1 mRNA downstream 461772 6993956 ~ 7005678 (+) True LOC120556365
XM_039795696.1 mRNA downstream 654545 7186729 ~ 7211577 (+) True bnc1
XM_039795970.1 mRNA downstream 700364 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 700364 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 700364 7232548 ~ 7290869 (+) True sh3gl3a
TU34538 other upstream 239742 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 239742 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 241441 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 262810 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 476621 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 2221517 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2536545 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 3034647 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 3315093 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5499437 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile