RNA id: TU34660


Basic Information

Item Value
RNA id TU34660
length 424
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G25827
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6590195 ~ 6590618 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGTCCCCGCCGACCATGCACAAGTCCCCGGCCACGGTGCACGACGTCCGTCTGCTGCCCGGGGACCCGCGGTCCTCTGCGCCCGTCGAGGAGCCATAGTCCCCGGACACTCCGTTCACACTCCCGGTCAGCAGACTGTCCGTTTCCATCCAGGAAATCAACAAGTTCTGTCCCAAGTTCTGTTTTCCGCTCCCCCGCTGGGAAAGTGAAAGTAGAAAGCGTGGTAGGAGACGGGGTGAAACCTGCTCCGGTGGAACCGTGAAGCGGAGTTTAGTCCGTCTGTTGAGCCAGTGACAAACAAGTCAAAGAAAGCGTCAGTCACGGTTAGCTTCAAACAGCATAGCGAGCCTCAAGCTGAGGGCAGAGGAATGCACTTTTAGGAAGTCGCtgctcggctcggctcggctctGCTCCACCCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34657 lncRNA upstream 58011 6529518 ~ 6532184 (+) True G25824
TU34627 lncRNA upstream 161935 6428058 ~ 6428260 (+) True G25797
TU34614 lncRNA upstream 194489 6390599 ~ 6395706 (+) True rwdd3
TU34500 lncRNA upstream 309408 6278701 ~ 6280787 (+) True G25713
TU34494 lncRNA upstream 552226 6036859 ~ 6037969 (+) True G25710
TU34687 lncRNA downstream 50832 6641450 ~ 6641983 (+) True G25850
TU34729 lncRNA downstream 383717 6974335 ~ 6979755 (+) True G25888
TU34737 lncRNA downstream 396894 6987512 ~ 6991931 (+) True G25893
TU34739 lncRNA downstream 402377 6992995 ~ 6993204 (+) True G25895
TU34734 lncRNA downstream 411810 7002428 ~ 7005647 (+) False LOC120556365
XM_039794210.1 mRNA upstream 94474 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 195391 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 195393 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 279055 6295097 ~ 6311140 (+) True mtch2
XM_039794284.1 mRNA upstream 323487 6262410 ~ 6266708 (+) False LOC120555541
XM_039795921.1 mRNA downstream 403338 6993956 ~ 7005678 (+) True LOC120556365
XM_039795696.1 mRNA downstream 596111 7186729 ~ 7211577 (+) True bnc1
XM_039795970.1 mRNA downstream 641930 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 641930 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 641930 7232548 ~ 7290869 (+) True sh3gl3a
TU34538 other upstream 300419 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 300419 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 302118 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 323487 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 537298 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 2163083 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2478111 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2976213 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 3256659 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5441003 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile