RNA id: TU34687


Basic Information

Item Value
RNA id TU34687
length 534
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G25850
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6641450 ~ 6641983 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attctcgtttttggtcaaatggccttctgaatgggagtgctaggggcactactatgatagcatcaaaataactatttttaaaacactaagaaggctcgacacaacatgaaactttgctcgaagtatcaccaggggctctacaccttaacgaaaacattgagaacattgtttgtgtacacagagtttactaaaaagaaaggtttttaaCAATTCACTTTAGCTGTTGATTTTTCCGGTCGCCGTCCGTCTAGCCAGTCAAAAAtagtcgatctccgaatgcaacgtaacagggaggagagtaaagatggaaagctcctaaagcttcgttccatataaatgcacggattatttgttgttttgtcgttaatTAATATTGACCTTAttgacatttcctcctatggagtccgttcattcgcattcggagatcgacacGTTTTGACTGACAAGATGGCAGATAGCGTAAACaacaactgctaaagtgagttgttcaaaacctttctttttagtaaaacactgtgtacacaaacaatgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34660 lncRNA upstream 50832 6590195 ~ 6590618 (+) True G25827
TU34657 lncRNA upstream 109266 6529518 ~ 6532184 (+) True G25824
TU34627 lncRNA upstream 213190 6428058 ~ 6428260 (+) True G25797
TU34614 lncRNA upstream 245744 6390599 ~ 6395706 (+) True rwdd3
TU34500 lncRNA upstream 360663 6278701 ~ 6280787 (+) True G25713
TU34729 lncRNA downstream 332352 6974335 ~ 6979755 (+) True G25888
TU34737 lncRNA downstream 345529 6987512 ~ 6991931 (+) True G25893
TU34739 lncRNA downstream 351012 6992995 ~ 6993204 (+) True G25895
TU34734 lncRNA downstream 360445 7002428 ~ 7005647 (+) False LOC120556365
TU34746 lncRNA downstream 381883 7023866 ~ 7025761 (+) True G25902
XM_039794210.1 mRNA upstream 145729 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 246646 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 246648 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 330310 6295097 ~ 6311140 (+) True mtch2
XM_039794284.1 mRNA upstream 374742 6262410 ~ 6266708 (+) False LOC120555541
XM_039795921.1 mRNA downstream 351973 6993956 ~ 7005678 (+) True LOC120556365
XM_039795696.1 mRNA downstream 544746 7186729 ~ 7211577 (+) True bnc1
XM_039795970.1 mRNA downstream 590565 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 590565 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 590565 7232548 ~ 7290869 (+) True sh3gl3a
TU34538 other upstream 351674 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 351674 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 353373 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 374742 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 588553 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 2111718 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2426746 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2924848 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 3205294 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5389638 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile