RNA id: TU34729


Basic Information

Item Value
RNA id TU34729
length 4890
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G25888
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6974335 ~ 6979755 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAAATGTTTACTAGGATGCCATCTACTCGGTCCCATGCTGCTCTTCATCTCACATACACACTTGTGCTCCTGTAGTTCAGTACACTGGACGCCACAGTCCACCAAATGTGCCTTTGATGGAGACACGTCGGCTATATTCTGGTCAGCCGTCTGGACACACAGTTGCTGGTTTTGGACTTCTTTATTCCTGTAAGCGCCATCCTCCACCTCCATGTCCATGTCCGCTCCGTTTAGGCGAATCAGCGGACACCTACTGGTGTCTGCGTCCTCTTCAGGGAGGGTAGATATAATTTGTTTACTCTGCAGGGGAGTCGGGGAAGCCAAGGGGCCCTTTACTAAAGGAGCCATGCTCTGGCCTTGCTTTAGTCTCCATATTTTAGAGCCATCCATCTCACTGCACTTCTTAGTGGGGATAGAGGGGGCAAGAGACTCCACAGACGCATTCATTTCTCTCTCCGTCTGACTGCTACACATTTGAGAGGGAATGATCTCTGTAGTGTCTGCTTGTGGATTTGTCTCGTCGCCATCTTCTTGCTCATTGTCCGGGAGCTTTTGGGAATTATTTTGCGAATGTAGCAGTTCATCTGTGTAGGGTAGGCTATGCCTTACAGCTCTCACGGATTCTGCATTTTGCTCTTCATGAGCTTTTCTCAGTTTGAAGATCTTGAAAAGGGTTGCAATGTCCATAGAGCTTAAGTTACCCTCAGCATTACCATTAGCATCATTAGTATAAGCGGCATCAGCCATCACTGGACCATTTTTGGTCTGAGTTAGACTCTGGGAAAAAGACTTCACATGCTCTTCTTCAGCTTCGTAAGACGGCAGCTGGTGGTCATTCTGAGGCAGCGTTGGAACAGAGTCAGTTACTTCAGGTTCCAGCATGCCGTTCTGCAGCAGACATTCCTTACTGGGGATAAAGGGGGGAAAAGACTCCACAgtttttatttgatagggagTCGTgtcttcatgtggatttgtctCGTCGCCATCTTCTTGCTCATCGTCAGGGATCTTTTGGGATTCCTTTTGTGAATGTAGCAGTTCATCTGTGTAAAATAGCGTACGCCTTACGCAGTCTACCAATCCCACCGGCTCATTTTCTCTTCTGGATTTTGCCTTTTGCTCTTCATCCGCTTCCCTCAGTTTGAAAAAGTCTGGGCTGTTCTTAGAGCTTAAGTTACCCTTGGCATTATGATTAGCACCGTCTTGCACCACTGGACCAGTTTTGGTCTGAGTTGGACTCTGGTAAAAAGACTTCTCATGGTCTTCAGTTTCGTAAGACGGCAGCTGGTGGTCATTCTGAGGCGGTGTTTTGGATACTTGAACACAGTCATTTACTTCAGGTTCCAACATGCCGTTCTGCAGCAGCCAGTCCTTAGAAGGGATAAAGGGGGGCAGAGACTCCACAGACCAAACAGACTCATtcatttttctctccatctgaGAACTATTTAAAGAGATTTGATAGGGAACGATCTCTGTCGCGTCTTTGTGTGGATTTGTCTCGTTCTGTACTAGCTCATTGTCAGGGAGATTTTGGGATTCGTTTTGTGAACGTAGCAGTTTATCCCTCCTTACTGAGCCAATGAATTCCACCGACTCATTTTCTCTTCTGCATTCTGCATTTTGCTCTTCATGAGCTTTTCTCAGTTTGAGGATCAGACAAAGTGTTGCACTGTCCTTAGAGCTTAAGTTACCCTTAGCATTATGATTAGCACATTCAGGCACCACTGGACCAGTTTTGGTCTGAGTTGGACTCTGGTAAAAAGACTTCTCATGGTCTTCAGTTTCGTAAGACGGCAGCTGGGGATCATTCTGAGGTGGTGTTTTGGACATTGGAACGGAGTCTGTTACTTCAGGCTCCAATATACCGTTCTGCAGCAGCCACTCCTTAGAGGGGATAAAGGGGGGCAGAGACTCCACAGACCAAACAGACTCATtcatttttctctccatctgaCAGCTATACGTTTGATTGGGAATTATCTCGGTCATGTCTGCTTGTGGATTTGTCTCGTTGCCATTGTCTTGCTCATTGTAAGGGAGCTTTTGGgattctttttgtgaatgtagcaGTTCATCTTCGTAGGGTAGGCTACGTCTTCCAGAGCCAACCAATCCCATCGGCTCACTTTCTCTTCTGCATTCAGCATTGTGTCCTTTATGAGCATCTATCAGTTTGAGGATCTGGAAAAGGGTTACACTGTCCATAGAACTTAAGTCACTCTCAGCAACATCATTAACATATTCATCGTCAGCCATTAATGGACCATTTTTGTTCGGAGTTGTACTCTGGTAAAAAGACTTTGGTTCTTCAGTTTCGTAAGACAGCAGCTGGTGGTCATTTTGAGGTAGTGTTTCGGACATTTGACCAGAGTCAGTTACTTTAGGCTCCAAAATTCCGTTTGTGAGGATAAAGGGGGGCAGAGACTTTACAGACCCATtcatttttctctccatctgaGAAAAAATTAAAGACATTTTATAGGGAATGATCTCTGTCGTGTCTTCGTGTGGATTTGTCTCGTCATGTACTAGCTCATTGTCAGGGAGCTTTTGGGATTGGTTTTGTGAACGTAGCAGTTCATCTCTCCTTACAGAGCCAATGAATTCCACCAACTCATTTTCTCTTCTGGATTCTGCATTTCGCTCTTCATGAACTTTTCTCAGTTTAAGGATTGTGAAAAGGGTTGCACTATCCTCAGAGTGCAAGTTACCCTTGGCATTATGATTAGCACCGTCAGCCACCACCGGACCATTTTTGGTCTGAGTTGGACTCTGGTAAAAAGACTTTTCATGGTCTTCAGTTTCGTAAGACGGCAGCTGGTGGTCATTCTGAGGAGGCATGTTTGACACTGGAACAGAGTCATTAACTTCAGGTTCCAACATGCCGTTCTGCAGCAGCCAGTCCTTAGAAGGGATAAAGGGGGGCAGAGACTTTACAGACCAAACAGACTCATtcatttttctctccatctgaGAACCATTTAAAGAGATTTGATAGGGAATGATCTCTGTCGTGTCTTCGTGTGGATTTGTCTCGTCATGTACTAGCTCATTGTCAGGGAACATTTGGGATTCGTTTTGAGAATGTAGCAGTTCATCTCTCCTTACAGAGCCAATGAATTCCACCGACTCATTTTCTCTTCTGGATTCTGCATTTTGCTCTTCATGAGCTTTTCTCAGTTTGAGGATCTGAAAAAGTGTTGTACTGTCCTTAGAGCTAAAATTACTCCTAGCATTGTGATTAGCGCCGTCTGGCATCACTGGACCAGTTTTGATCTGAGTTGGACTCTGGTAAAAAGACTTTTCATGGTCTTCTTGAGTTTCGTAAGACCGCAGCTGGTGGTCATTCTGAGGTGGTGTTTTGGACACTTGAACAGAGTCAGTTACTTCAGGTTCCAACATGCCGTTCTGCAGCAGCCACTCCTTAGTGGGGATGGGGGGCAGATactttatagaccaaacagACTCATTCATTTTTCTCTCCATCGGAGTACTATTTAAAGACATTTGATAGAGCTCTGTCGTGGTTGCATGTGGATTTGTCTCGTCGCCATCTTCTTGCTCATTGTCAGGGAGCTTTCGGGATTCCTTTCGTGAATGTAGCAGTTCATCCGTGTAGGGTAGACTACACCTTACAGCATTTCTGGATTCTGCATTTCGCTCTTCATGGTCATTTCTTAGTTTGAAGATTGTGCAGAGGGTTGAAATGTCCATTGAGCTTAAGCTATCCTCAACATTACCATTAGCATAAGCACAGTCAGCAACAACTGGCCCATTTGTGGTCTGAGTTGGACTCTGGTAAAAAGACCCATCATGGTCTTCAGTTGCGTAAGATGGCAGCTGGTGGTCATTCTGAGGCAGAGTTTTGGACATTGGAACAGGGTCAATTACTTCAGGCTCCAACATGCTGTTCTGTAGTAGCCACTCCTTGGTGGGGACAAAGGGGGGAAGAGACGCCACAGACCAAACAGACTCATTcatttccctctctgtctgacaGCTATTCATTTGATAGGGAATGATCTCTGTTGTGTCTTCATGTGCATTTGTCTCGTCATCTTCTTGCTCATTGTCAGGGAGCTTTCGGGATTTATTATGTGAATGTAGCAGCTTTTCTGTGTAGGGCAGGCTACGCTTTAGAGAGCCAATCAATCCCACCGGTTCATTTTCTCTTCTGCATTCTGCCTTTTGTTCTCCATGAGCTTTTTTAAGTTTGAGGATCTGAAAAAGTGTTGCACTGTTCTTAGAGCATAGGTTACGCTCAGCATTATCATTCGTACTGTCAGCCACCACTGGACCATTTTTGGTCTGAGTTGGATTCTGGTAAAAAGACTTATGTTCTTCTTCAGTTTCGTAAGCCAGCAGGTGTTTGTCATTCTGAGGAAGTGCCATTTTCAGAATCCTTGCCTGCGGCGTGCCACTTCTCCAACTCATTAGAATGTCAGGAACAGAGACGCATCTCTCTTTGACAACCTCTTGTTGAAAAGAGCTACAAACCGGAACTATACTATCTGGAGAACTCACTGACATGAGTGAATTGCTGCTGGGTAGGGTATTGTTCCTAACCTCGGCAGATGGAGAGTTTGAGCCGGTTCCACGCCCAGAATCTGAGCCGATGAGAGGGCTTCTTTCTCCGTAACGACCTCTCTGTACGGGTTCTGTTTGGACCTCACAGTTAACAGTTTCTCTAATATTGCCAGTATGAGGCAGATTAATTCTGTGGGTCCGGTTTGGGTTCTGGTAGGGTGCGCTAGGAGCGTAGACTTGGGGGTGGAGGAAACGTCTGTCGACAGGTTGGATGTGAGGGTTGGGGTGGTACAGAATGTGTGGTGGAGCATCCATATAGGGATGAGGAGGGAATGGGGGCATGACCATACCATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34687 lncRNA upstream 332352 6641450 ~ 6641983 (+) True G25850
TU34660 lncRNA upstream 383717 6590195 ~ 6590618 (+) True G25827
TU34657 lncRNA upstream 442151 6529518 ~ 6532184 (+) True G25824
TU34627 lncRNA upstream 546075 6428058 ~ 6428260 (+) True G25797
TU34614 lncRNA upstream 578629 6390599 ~ 6395706 (+) True rwdd3
TU34737 lncRNA downstream 7757 6987512 ~ 6991931 (+) True G25893
TU34739 lncRNA downstream 13240 6992995 ~ 6993204 (+) True G25895
TU34734 lncRNA downstream 22673 7002428 ~ 7005647 (+) False LOC120556365
TU34746 lncRNA downstream 44111 7023866 ~ 7025761 (+) True G25902
XR_005638846.1 lncRNA downstream 62428 7042183 ~ 7045161 (+) True LOC120556370
XM_039794210.1 mRNA upstream 478614 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 579531 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 579533 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 663195 6295097 ~ 6311140 (+) True mtch2
XM_039794284.1 mRNA upstream 707627 6262410 ~ 6266708 (+) False LOC120555541
XM_039795921.1 mRNA downstream 14201 6993956 ~ 7005678 (+) True LOC120556365
XM_039795696.1 mRNA downstream 206974 7186729 ~ 7211577 (+) True bnc1
XM_039795970.1 mRNA downstream 252793 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 252793 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 252793 7232548 ~ 7290869 (+) True sh3gl3a
TU34538 other upstream 684559 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 684559 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 686258 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 707627 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 921438 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1773946 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2088974 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2587076 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2867522 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5051866 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile