RNA id: XM_039795921.1


Basic Information

Item Value
RNA id XM_039795921.1
length 5636
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC120556365
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6993956 ~ 7005678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttaaattttttgttccagggaaggaggttgttctTTTGATGCAGGCCCTGAACTCCCTAGCCACTCCTGAGGAGAAACTAGCCGCTTTGTGCAAGAAATACGCAGACCTGTTGGAGGAGAGCCGCTGCATGCAGAAGCGTCTGAAAGCCCTGCAGAAGAAACAGTCTCAGATCGTGAAGGAGAAGATCCACCTGCAGGGGGAGCACAGCAAGGCCATCCTGGCCCGCAGCAAGCTGGAGAGCCTCTGCAGGGAGCTGCAGAGACACAACAAGACACTGAAGGAGGAGAACTCCCAGCGGTCCCGGGAGTACGAGGAGCAGCGGAAGGAGGCCATGCTGCACTTCCAGATGACCCTGAGCGACATCGAGGTGCAGATGGAGCAGCATAGCTCCCACAACACCAAGCTGAGGCAGGAGAACATGGAGCTGGCCGAGAAGCTCAAGAAGCTCATCGAGCAGTACGAGCTCCGAGAGGAGCACATAGACAAGGTGTTCAAGCAcaaggagctgcagcagcagctaatggACGCCAAGCTGCAGAGAATCACCGAGATGATGAAAGAAGTCGAGGACAAGCAGCAGAGGGAGCGAGACTTTCTGTTGAAGGACGCCACAGAGTCCAGACGCAAGTGTGAGTTGATGAAGGAGCAAGAAACGCAGCTCAAacaacagctctcCCTGTACATGGACAAGTTTGAGGAGTTTCAGAGCACGCTGGCCAAAAGCAACGAAGTCTTCACCACGTTCAGACAGGAGATGGAGAAGATGACCAAGAAGATCAAGAAGCTGGAGAAGGAGACGACACAGTGGAGGACCAAATGGGAGAGCAACAACCAGGCGCTGCTGCAGATGGCCGAGGAGAAAACTCTGCGCGACGGCCACTTCAAGGCCCTGCAGGGGAAGCTGGAGCTGCTGGAGAGGCTGTGCCGCGCCCTGCAGAAGGAGAGGAACGACCTCAACAACCAGCTGAGCCTCCTGCAGGAGCCGGGAGACAAAGGGAGCGCAGCGCTTCCCGAGGCCCAGCCGCCAGAGCCCTCTGCTggggaggacgaggaggaggaggaggaggaggaggaggaggcggcggcagaggaggaggcggaggaggaggagggcggtCTGGCACAGGCCGGCGAGCTGGAGGCGGAGGGCATCCACCGAGCGCCCCGACCCCCGAACTGGAGCCCACGGCGGCCGCTACTGACACAACCACTACCGCTGCTACGACGACGAGCAGCCAGCCCGCAGAAACGGCAGCCTCGCAGCAGGACTGAAGAAGCCCCCCCACACGGTGAGAAGGCTGTGATGGGAGGGGGCTCCACAAACCTCCAGCCCACAGAAATAAAGCATTTTCAACGGGGatagatttcttttcttttgcctCTTCGGGTTTCTACACGGAAACTCAACCCCAtatctctcttctttttttttatgtgtgtgccgTTAGTAAAAGAGGAATAACATGACTCTATTGTAAGGATTCTATTCTAAAATGTTGCCAGTGTTCACATTGGTAATAACTGGCTTCGTGGCAAGCACTTGGTCCTCCCGTTTTCTACCGCAACTGTATTTTCGTAGGCAATTTCCATGCAGTCCCATTGACGCTGTTCAGTCAAATTGGCCAGGGTGGCAACTTgcgatttttatttttcatcgaTTAATCAGCCGATCACTTTCTGGATGAACGGGGTTAGTAGTTTGGATTCTAAAAGGTGAGAAATGTGGATGAGCGTTCCCCCAAAaagtccaagatgacgtcctcaagtGTCTCGTTCTGTCCACAGCTCAAAGATATTCCgttcactgtcacagaggagagaagagaactagaacatattcacattaaaCAAGCTGCAGTCAGAGAATTAGCCCCTTTTTTCCCATTTAAAAAGTGACTCCAACTGATTAATCGATTTATCAAAATAACCCGCCGATTGATTTAAATAGTTGACAActtatcgattcatctttgcagatCTATAATTGGCCTTCCGTTTCTCCCTTCACATGGCCTCTCCCTGTAGCATCCCACGTCTCGCTGGCTATTCAAGTTGGATTCAATTCCAACATGGGCATATCGCATGCATAATTTGTCATAGGTCGCTTTTGATTAATGTAGCCCTTAATGTCCCCATGTGATCTGAAAGAGCAAATGGGACATAGTGTAGAACAAGTTTCAAAGTCTGTTCTTGGCCACAGGGTATTAAGCAAGTTTTTCTGATCATGTCATATCaggtttttaaattttaaaattttCAGGATAAGAGCAGGAAGTGTCAGCAAAATTAATCTGCACATGGGTGCGTGTAATATAATAATGTGGTGGTGGTTATTTTTTTCCGGCTCGGCGACGTGGTGACTACAGCTGGCGAGCTACTGTAGCTGCCGAGGTTAACCTGCCATCAGTAACTCTGGCAGCACACTTGCTAATTGCCAGTTAGCGAGCTAGCTAGTAGGGCTGTCACCTTATCTGAAAGGCGCCATGTCATTTCTCCGACctcaataacccgaaaaattcccttttgTTCCTACTACAGCCCACTAGTCTTGACGTCCACCAGCCGAGaccccgcccttcaatagcatttattggccaggcgtccatgcttacgcaaggtaacgtaaccccatttgtacaaaccactcgaggtcaaatgcctaaccccaaccaattgagatgcttcgtagggcgggtcttggcgcggccatagtgggatttgtaattaCGCCACCAGTGGGACGTCAATACTAGTGGGCTGTaagaccaaagggaatttttcgggttattgagaggttGGAAGAATAGAGCGTCTGAGAAATGGGCAGTACCCCATCTGAAAAGCAATATTTGATCTCTACTAATCTGTTTTGAATTCAAAATTCAGAAGCGCATTAACCATTCATCCTCCAGCAAGGGGTGTCATGGCCTGTCCGTAAACTAGGCTGCTGTTTTTGTCCGTTTTTATTCACGCAAAATAGAGAAAACTAGCAAGCGCTGCTGAAAGGATAGCCATGACACCAAACCATCTGAGAAGTAACGTGTGGAGGCATTTGGGATTTTTGGACTGAAAACTTCAGTCATAGCTTCATCATAGCTTGTCACTCAAGCGATGTAGTGGAGGCACCGCTGAATGAAAACTTTGATATATTCACTTGAACTTTGGCTTTTGGGAATAGTGGCAGCGCTGCTAGCTAAAGTTAAAGTTGACTCAGGAGACATTTTCAGACCATCAAACTCCTGTGGAGCACGTAGTCATCTGGTAGAGCTGGGTTATTTCAAATGGTTTGCGACACAGCTAATATGATAGCTTCCTCTATCTGGTTCTCTGTCATTTGCATTGCAAAgaactaaaaaaaatatatatatttttctgacTGGGCCAGATGTCACAACCAGCTTAATAAATAGCCACTTCTTTACAGGCTGTTAGCAACAGAGTTAATTTCccctagggttgggcatcgttttgattttaacaattctgattcagATTCTTCGTTTTTGATTCCGGTTCCTATAGAGTCCagttctttgaggggtggagttgaaacgggtcacatgcttatttcacagataagaggaaaaTGTTGTTATACATAACATAGTCCTATTCCAAAAATGACGTTAGATGACATGTTCTTGCAATTGTCGTCTGTTACACTGGCAGGGCGTTTGCTGCCACTGGTGGTCAATCCACGTCATTTTTTAACTGAACTCTGGGATATGTATTATTAAAGCTCACTTCTGTTACCACAGGTGTCACCAAATCGACCAGGATCTTAAGGAGTTAAAAGGGTTAGAACTGAAACATAGGTTGACCttctattttaacttttttctgTCCCTGCTTAAAAATgtaatgaggaggaggaggaagggggatATGGGAAATGAATGATACTGGTCGAGAACATTGGTTGTTGCTGGCTTTTTGCCCACTTGAGAACTTAAATGATGTAGAGATGAAAGCTCAGCGAATGTCCTTGTGCAACAATGTGTTGCTTGATTTTGATCTGCATCTCAgcacttttgttttttcttttgttttaaatgaccCATGTCATTTGGTTTCCATACGGCCAGCTCAACAGGGCGTACAGAAAAGAGCCATGTCAGGAGTTCTGAAATGCCACTTTATACTGGAAGAagatggtttgttttttttctgatgcgTGTGAATAAAAAGATTTTTGCAGATTTCTATCAGCGATGCATATCAATAGGAGGCATTACAGGAGCTGCAGTTATTGTAAGGAAACACTGGGATTGTTCTACTAGCAGCGTTAACGAATAGAATCCTCTCAAATCAAAGTCAATTTACACTCTCATCCTCTGCAGATGTTAttctaaggccggttacacactgcctgcgtggcgtggaGTTTGTCGCGTggcagctgcgtggatttttccacgcctttacacaccagaaacgtgtctgacaacaacgtaggcagtattgactgcaaaatgggctacagaattattttttttaattacattcatATCTGCATTCATATCAAAATCTATAGACTTtcaaacatgtcatttattaataggtatttgtgtctaaacgacaaACATcttttctattttgcctggaaacgcttcaaAACACCTAAATGTgtgtcggttctatttctagcaggcacgcgtttacGGCGCGGCTCGacgcgtgtcacgcaggcagtgtaaGCTCTAACCCGTTAACacgggagccgaaatataaactgacacgctcgcgcgaagCAGCCAGTGCGTAACCGGCCTAAGTCACCAAGTTTTCCTTTCTGTTAAATCTTTAACTTTGCTCCGACAACTACGTAGGCACGGTCTCCTAATGCAGCTACTGTCCTGCAACAGCCGGTCCAATAACTTgaatctagtaggctacttaactCTAACCTGCGATTGCTTCGTCTGCATCCTTACTCGGAATATTTTATTTCTGGATCTAACTACAAGACTGATCCAAGATCAGCACCTTTAggcaacttttattttttttcccccctctgcaGTGGAAACAGAATTGCTTGTTAACTCATCAAAGTGTTTGGTGAAGGACCAGATGCCCACAGCACTGTTAAATGTGTTGTTCCGGCCATCAGTTTGTCACGTGGCTGTCCCTTTTCCAACTctgtattttgtaaaaatcaGTGAGAATCATAGGTGGCATTACTGACCAATAATGTTATAGGGGTGTTACTGACAAATAATCTTCCTTAACAAATATGTACACAGAGCCATGTGTAACTGGGTGGAATGTCCTTAAAGACGTTGCCTTTCAGTCTTTTCTACATTTCTCCTCGTGCTTATCTTCATATTTGATGCGATGAGGTCAGGTGGTGTGCGTATTTTTCTTTCGGGTAGAGGACGGGTCTAGTTTGAGGGGGAAGACCTTTCGGCAtccatttcctctttctttggcGTTGCCCCAGATTGACTCTCAGGTAATGTCAGAATCTACCTCTGTAGGTGAGACTAACTGTGAAAGAAGAGGCATGAGTCACCATAGCTTTGGAGAGCTCTATTTTTACTATAAATGAGCCCACACACCCCCCCTTTGATTGTACAATGTTCTTATAGTCCTGTCTTGCTTTtcaataaacatttttgtaGAATTTGCAA

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34739 lncRNA upstream 752 6992995 ~ 6993204 (+) True G25895
TU34737 lncRNA upstream 2025 6987512 ~ 6991931 (+) True G25893
TU34729 lncRNA upstream 14201 6974335 ~ 6979755 (+) True G25888
TU34687 lncRNA upstream 351973 6641450 ~ 6641983 (+) True G25850
TU34660 lncRNA upstream 403338 6590195 ~ 6590618 (+) True G25827
TU34746 lncRNA downstream 18188 7023866 ~ 7025761 (+) True G25902
XR_005638846.1 lncRNA downstream 36505 7042183 ~ 7045161 (+) True LOC120556370
TU34791 lncRNA downstream 292821 7298499 ~ 7298701 (+) True G25942
TU34800 lncRNA downstream 325032 7330710 ~ 7337252 (+) True G25950
XR_005638763.1 lncRNA downstream 624444 7630122 ~ 7632825 (+) True LOC120555850
XM_039794210.1 mRNA upstream 498235 6493937 ~ 6495721 (+) True LOC120555501
XM_039796247.1 mRNA upstream 599152 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 599154 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 682816 6295097 ~ 6311140 (+) True mtch2
XM_039794284.1 mRNA upstream 727248 6262410 ~ 6266708 (+) False LOC120555541
XM_039795696.1 mRNA downstream 181051 7186729 ~ 7211577 (+) True bnc1
XM_039795970.1 mRNA downstream 226870 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 226870 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 226870 7232548 ~ 7290869 (+) True sh3gl3a
XM_039794993.1 mRNA downstream 312231 7317909 ~ 7330702 (+) True LOC120555848
TU34538 other upstream 704180 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 704180 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 705879 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 727248 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 941059 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1748023 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2063051 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2561153 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2841599 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5025943 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile