RNA id: TU34756


Basic Information

Item Value
RNA id TU34756
length 4491
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G25910
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7001163 ~ 7005653 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaAAAGCAAGACAGGACTATAAGAACATTGTACAATCAAAGGGGGGGTGTGTGGGCTCATTTATAGTAAAAATAGAGCTCTCCAAAGCTATGGTGACTCATGCCTCTTCTTTCACAGTTAGTCTCACCTACAGAGGTAGATTCTGACATTACCTGAGAGTCAATCTGGGGCAACgccaaagaaagaggaaatggaTGCCGAAAGGTCTTCCCCCTCAAACTAGACCCGTCCTCTACCCGAAAGAAAAATACGCACACCACCTGACCTCATCGCATCAAATATGAAGATAAGCACGAGGAGAAATGTAGAAAAGACTGAAAGGCAACGTCTTTAAGGACATTCCACCCAGTTACACATGGCTCTGTGTACATATTTGTTAAGGAAGATTATTTGTCAGTAACACCCCTATAACATTATTGGTCAGTAATGCCACCTATGATTCTCACtgatttttacaaaatacagAGTTGGAAAAGGGACAGCCACGTGACAAACTGATGGCCGGAACAACACATTTAACAGTGCTGTGGGCATCTGGTCCTTCACCAAACACTTTGATGAGTTAACAAGCAATTCTGTTTCCACtgcagaggggggaaaaaaaataaaagttgccTAAAGGTGCTGATCTTGGATCAGTCTTGTAGTTAGATCCAGAAATAAAATATTCCGAGTAAGGATGCAGACGAAGCAATCGCAGGTTAGagttaagtagcctactagattcAAGTTATTGGACCGGCTGTTGCAGGACAGTAGCTGCATTAGGAGACCGTGCCTACGTAGTTGTCGGAGCAAAGTTAAAGATTTAACAGAAAGGAAAACTTGGTGACTTAGGCCGGTTACGCACTGGCTGcttcgcgcgagcgtgtcagtttatatttcggctcccgtGTTAACGGGTTAGAGCttacactgcctgcgtgacacgcgtCGAGCCGCGCCgtaaacgcgtgcctgctagaaatagaaccgacacACATTTAGGTGTTttgaagcgtttccaggcaaaatagaaaagATGTttgtcgtttagacacaaatacctattaataaatgacatgtttgaAAGTCTATAGATTTTGATATGAATGCAGATatgaatgtaattaaaaaaaataattctgtagcccattttgcagtcaatactgcctacgttgttgtcagacacgtttctggtgtgtaaaggcgtggaaaaatccacgcagctgccACGCGACAAACtccacgccacgcaggcagtgtgtaaccggccttagaaTAACATCTGCAGAGGATGAGAGTGTAAATTGACTTTGATTTGAGAGGATTCTATTCGTTAACGCTGCTAGTAGAACAATCCCAGTGTTTCCTTACAATAACTGCAGCTCCTGTAATGCCTCCTATTGATATGCATCGCTGATAGAAATCTGCAAAAATCTTTTTATTCACAcgcatcagaaaaaaaacaaaccatctTCTTCCAGTATAAAGTGGCATTTCAGAACTCCTGACATGGCTCTTTTCTGTACGCCCTGTTGAGCTGGCCGTATGGAAACCAAATGACATGggtcatttaaaacaaaagaaaaaacaaaagtgcTGAGATGCAGATCAAAATCAAGCAACACATTGTTGCACAAGGACATTCGCTGAGCTTTCATCTCTACATCATTTAAGTTCTCAAGTGGGCAAAAAGCCAGCAACAACCAATGTTCTCGACCAGTATCATTCATTTCCCATatcccccttcctcctcctcctcattacATTTTTAAGCAGGGAcagaaaaaagttaaaatagaaGGTCAACCTATGTTTCAGTTCTAACCCTTTTAACTCCTTAAGATCCTGGTCGATTTGGTGACACCTGTGGTAACAGAAGTGAGCTTTAATAATACATATCCCAGAGTTCAGTTAAAAAATGACGTGGATTGACCACCAGTGGCAGCAAACGCCCTGCCAGTGTAACAGACGACAATTGCAAGAACATGTCATCTAACGTCATTTTTGGAATAGGACTATGTTATGTATAACAACAttttcctcttatctgtgaaataagcatgtgacccgtttcaactccacccctcaaagaactGGACTCTATAGGAACCGGAATCAAAAACGAAGAATctgaatcagaattgttaaaatcaaaacgatgcccaaccctagggGAAATTAACTCTGTTGCTAACAGCCTGTAAAGAAGTGGCTATTTATTAAGCTGGTTGTGACATCTGGCCCAgtcagaaaaatatatatattttttttagttcTTTGCAATGCAAATGACAGAGAACCAGATAGAGGAAGCTATCATATTAGCTGTGTCGCAAACCATTTGAAATAACCCAGCTCTACCAGATGACTACGTGCTCCACAGGAGTTTGATGGTCTGAAAATGTCTCCTGAGTCAACTTTAACTTTAGCTAGCAGCGCTGCCACTATTCCCAAAAGCCAAAGTTCAAGTGAATATATCAAAGTTTTCATTCAGCGGTGCCTCCACTACATCGCTTGAGTGACAAGCTATGATGAAGCTATGACTGAAGTTTTCAGTCCAAAAATCCCAAATGCCTCCACACGTTACTTCTCAGATGGTTTGGTGTCATGGCTATCCTTTCAGCAGCGCTTGCTAGTTTTCTCTATTTTGCGTGAATAAAAACGGACAAAAACAGCAGCCTAGTTTACGGACAGGCCATGACACCCCTTGCTGGAGGATGAATGGTTAATGCGCTTCTGAATTTTGAATTCAAAACAGATTAGTAGAGATCAAATATTGCTTTTCAGATGGGGTACTGCCCATTTCTCAGACGCTCTATTCTTCCaacctctcaataacccgaaaaattccctttggtcttACAGCCCACTAGTATTGACGTCCCACTGGTGGCGtaattacaaatcccactatggccgcgccaagacccgccctacgaagcatctcaattggttggggttaggcatttgacctcgagtggtttgtacaaatggggttacgttaccttgcgtaagcatggacgcctggccaataaatgctattgaagggcggggtCTCGGCTGGTGGACGTCAAGACTAGTGGGCTGTAGTAGGAAcaaaagggaatttttcgggttattgagGTCGGAGAAATGACATGGCGCCTTTCAGATAAGGTGACAGCCCTACTAGCTAGCTCGCTAACTGGCAATTAGCAAGTGTGCTGCCAGAGTTACTGATGGCAGGTTAACCTCGGCAGCTACAGTAGCTCGCCAGCTGTAGTCACCACGTCGCCGAGCCGGAAAAAAATAACCACCACCACATTATTATATTACACGCACCCATGTGCAGATTAATTTTGCTGACACTTCCTGCTCTTATCCTGaaaattttaaaatttaaaaacctGATATGACATGATCAGAAAAACTTGCTTAATACCCTGTGGCCAAGAACAGACTTTGAAACTTGTTCTACACTATGTCCCATTTGCTCTTTCAGATCACATGGGGACATTAAGGGCTACATTAATCAAAAGCGACCTATGACAAATTATGCATGCGATATGCCCATGTTGGAATTGAATCCAACTTGAATAGCCAGCGAGACGTGGGATGCTACAGGGAGAGGCCATGTGAAGGGAGAAACGGAAGGCCAATTATAGatctgcaaagatgaatcgataagTTGTCAACTATTTAAATCAATCGGCGGGTTATTTTGATAAATCGATTAATCAGTTGGAGTCACTTTTTAAATGGGAAAAAAGGGGCTAATTCTCTGACTGCAGCTTGtttaatgtgaatatgttctagttctcttctctcctctgtgacagtgaacGGAATATCTTTGAGCTGTGGACAGAACGAGACacttgaggacgtcatcttggacttTTTGGGGGAACGCTCATCCACATTTCTCACCTTTTAGAATCCAAACTACTAACCCCGTTCATCCAGAAAGTGATCGGCTGATTAAtcgatgaaaaataaaaatcgcAAGTTGCCACCCTGGCCAATTTGACTGAACAGCGTCAATGGGACTGCATGGAAATTGCCTACGAAAATACAGTTGCGGTAGAAAACGGGAGGACCAAGTGCTTGCCACGAAGCCAGTTATTACCAATGTGAACACTGGCAACATTTTAGAATAGAATCCTTACAATAGAGTCATGTTATTCCTCTTTTACTAAcggcacacacataaaaaaaaagaagagagataTGGGGTTGAGTTTCCGTGTAGAAACCCGAAGaggcaaaagaaaagaaatctatCCCCGTTGAAAATGCTTTATTTCTGTGGGCTGGAGGTTTGTGGAGCCCCCTCCCATCACAGCCTTCTCACCGTGTGGGGGGGCTTCTTCAGTCCTGCTGCGAGGCTGCCGTTTCTGCGGGCTGGCTGCTCGTCGTCGTAGCAGCGGTAGTGGTTGTGTCAGTAGCGGCCGCCGTGGGCTCCAGTTCGGGGGTCGGGGCGCTCGGTGGATGCCCTCCGCCTCCAGCTCGCCGGCCTGTGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638826.1 lncRNA downstream 37441 6901354 ~ 6963722 (-) True LOC120556213
TU34751 lncRNA downstream 79162 6910250 ~ 6922001 (-) True G25907
TU34717 lncRNA downstream 155107 6845813 ~ 6846056 (-) True G25877
TU34715 lncRNA downstream 212536 6788342 ~ 6788627 (-) True G25875
TU34713 lncRNA downstream 262149 6699432 ~ 6739014 (-) False G25874
TU34767 lncRNA upstream 48743 7054396 ~ 7054600 (-) True G25920
TU34769 lncRNA upstream 72554 7078207 ~ 7078433 (-) True G25922
TU34772 lncRNA upstream 130256 7135909 ~ 7136226 (-) True G25924
TU34783 lncRNA upstream 219631 7225284 ~ 7294154 (-) True G25934
TU34781 lncRNA upstream 276201 7281854 ~ 7284782 (-) True G25933
XM_039795920.1 mRNA downstream 18802 6970278 ~ 6982361 (-) True LOC120556364
XM_039795656.1 mRNA downstream 99814 6847479 ~ 6901349 (-) True ccdc102a
XM_039795937.1 mRNA downstream 307832 6642164 ~ 6693331 (-) True dok4
XM_039795958.1 mRNA downstream 370875 6598675 ~ 6630288 (-) True nadsyn1
XM_039795655.1 mRNA downstream 410524 6534042 ~ 6590639 (-) True tpcn2
XM_039795923.1 mRNA upstream 189 7005842 ~ 7023172 (-) False LOC120556367
XM_039795922.1 mRNA upstream 189 7005842 ~ 7023172 (-) True LOC120556367
XM_039795925.1 mRNA upstream 22913 7028566 ~ 7042141 (-) True hdgfl3
XM_039795924.1 mRNA upstream 23677 7029330 ~ 7042139 (-) False hdgfl3
XM_039795112.1 mRNA upstream 40200 7045853 ~ 7052477 (-) True LOC120555919
TU34701 other downstream 356557 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 833634 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 4724072 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 4725154 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 5167769 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638761.1 other upstream 327131 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 1138554 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 1847134 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 2289415 9295068 ~ 9296746 (-) True G26298
XR_005638773.1 other upstream 4471111 11476764 ~ 11510299 (-) True mtfmt

Expression Profile