RNA id: TU34781


Basic Information

Item Value
RNA id TU34781
length 399
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G25933
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7281854 ~ 7284782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCGGAGCGAGGAGCGGTAGGACAGGCCGTTGTGCTGACTGTTGTCCAGGAGGTCTACGTTGCTCCTGATAGACTTTGGTTTGAACTCTCTTTTGGGCCGGCTGCTGGCTGTGGATATCCTGGGGGGAGAAGACAGCAggAAGATCTACGCTCTCGTACGTCATTCTCCAGGAAATTGAACATGCTCCTCTCGGCCAGCTCTTTGCTCTCGTCGAACTTCTCCACAGCCTGCCGGATCTCCTCGTCAGGGATCTTCCCCTGACGCTTCCTCTTATAGTCAAAGTCCAACCGCCGGCCCTCCAGCTTCTTCAGGTGGTGCTGCAAACACAGACAGGACCATGTATCTTCATCCTGTGCAACGGATCATTCTTCTAATGTGTCTTTTGTATCGAAACTCA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34772 lncRNA downstream 145628 7135909 ~ 7136226 (-) True G25924
TU34769 lncRNA downstream 203421 7078207 ~ 7078433 (-) True G25922
TU34767 lncRNA downstream 227254 7054396 ~ 7054600 (-) True G25920
TU34756 lncRNA downstream 276201 7001163 ~ 7005653 (-) True G25910
TU34751 lncRNA downstream 359853 6910250 ~ 6922001 (-) True G25907
TU34808 lncRNA upstream 43925 7328707 ~ 7329657 (-) True G25955
TU34865 lncRNA upstream 454257 7739039 ~ 7739388 (-) True G26005
TU34868 lncRNA upstream 487584 7772366 ~ 7772846 (-) True G26008
XR_005638767.1 lncRNA upstream 507028 7791810 ~ 7793958 (-) True LOC120555853
XR_005638765.1 lncRNA upstream 510000 7794782 ~ 7831623 (-) False LOC120555851
XM_039795112.1 mRNA downstream 229377 7045853 ~ 7052477 (-) True LOC120555919
XM_039795925.1 mRNA downstream 239713 7028566 ~ 7042141 (-) True hdgfl3
XM_039795924.1 mRNA downstream 239715 7029330 ~ 7042139 (-) False hdgfl3
XM_039795923.1 mRNA downstream 258682 7005842 ~ 7023172 (-) False LOC120556367
XM_039794980.1 mRNA upstream 19302 7304084 ~ 7306330 (-) True LOC120555843
XM_039794989.1 mRNA upstream 45926 7330708 ~ 7344756 (-) True lmnl3
XM_039794988.1 mRNA upstream 45926 7330708 ~ 7344755 (-) False lmnl3
XM_039795142.1 mRNA upstream 1209571 8494353 ~ 8496635 (-) True LOC120555934
XM_039795362.1 mRNA upstream 1345826 8630608 ~ 8697622 (-) False il16
TU34701 other downstream 637248 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 1114325 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 5004763 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 5005845 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 5448460 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638761.1 other upstream 48002 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 859425 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 1568005 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 2010286 9295068 ~ 9296746 (-) True G26298
XR_005638773.1 other upstream 4191982 11476764 ~ 11510299 (-) True mtfmt

Expression Profile