RNA id: TU34865



Basic Information


Item Value
RNA id TU34865
length 350
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G26005
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7739039 ~ 7739388 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGAAAGTAGatgaaaaagtgtgttttatcaCCGGTCACAATTGTGACCGGTGGGATAATATGCGTATTCTCAATTAAACGTTgctcaaattgtttttttattaaaataagggTATTCTGACAGCAATCACTGAAACAGAATACAAAATACTTACTAAATCAAGAACTTGGGACTTTCCACACTGATACAGTATGAACACTGAgacattttgtattcatttgaATACAACTTGCAACAGCATTACATGTAGCATAACATGTAttgacacatttatttttaactaaaataaaacattttaaattgtacttGTGCAATATTGTAATGTTGGCATAACATTTTAGTGCAACATT

Function


GO: NA

KEGG:

id description
ko04216 Ferroptosis
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34808 lncRNA downstream 409382 7328707 ~ 7329657 (-) True G25955
TU34783 lncRNA downstream 444885 7225284 ~ 7294154 (-) True G25934
TU34781 lncRNA downstream 454257 7281854 ~ 7284782 (-) True G25933
TU34772 lncRNA downstream 602813 7135909 ~ 7136226 (-) True G25924
TU34769 lncRNA downstream 660606 7078207 ~ 7078433 (-) True G25922
TU34868 lncRNA upstream 32978 7772366 ~ 7772846 (-) True G26008
XR_005638767.1 lncRNA upstream 52422 7791810 ~ 7793958 (-) True LOC120555853
XR_005638765.1 lncRNA upstream 55394 7794782 ~ 7831623 (-) False LOC120555851
XR_005638764.1 lncRNA upstream 55394 7794782 ~ 7831623 (-) True LOC120555851
TU34886 lncRNA upstream 96510 7835898 ~ 7836325 (-) True G26026
XM_039794989.1 mRNA downstream 394283 7330708 ~ 7344756 (-) True lmnl3
XM_039794988.1 mRNA downstream 394284 7330708 ~ 7344755 (-) False lmnl3
XM_039794980.1 mRNA downstream 432709 7304084 ~ 7306330 (-) True LOC120555843
XM_039795112.1 mRNA downstream 686562 7045853 ~ 7052477 (-) True LOC120555919
XM_039795925.1 mRNA downstream 696898 7028566 ~ 7042141 (-) True hdgfl3
XM_039795142.1 mRNA upstream 754965 8494353 ~ 8496635 (-) True LOC120555934
XM_039795362.1 mRNA upstream 891220 8630608 ~ 8697622 (-) False il16
XM_039795361.1 mRNA upstream 891220 8630608 ~ 8697622 (-) True il16
XM_039794376.1 mRNA upstream 994031 8733419 ~ 8737410 (-) False tlnrd1
XM_039794378.1 mRNA upstream 1020213 8759601 ~ 8979144 (-) False LOC120555589
XR_005638761.1 other downstream 394283 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 1094433 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 1571510 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 5461948 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 5463030 2275475 ~ 2276009 (-) False G25228
TU34939 other upstream 404819 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 1113399 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 1555680 9295068 ~ 9296746 (-) True G26298
XR_005638773.1 other upstream 3737376 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 3903843 11643231 ~ 11669155 (-) True LOC120555651

Expression Profile