RNA id: TU34943


Basic Information

Item Value
RNA id TU34943
length 393
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26075
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8216986 ~ 8217378 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggcgacagcagcatggaggcgacgaagcagcaaggaggcgtcgtatgatcatttaaacaagttttatgacaaggttgtgaggatgggaaaaatcttacatttctgtgcaaactttgcccgccggctttcaaaaagaaaatccgcacttcagtcacatccaaaCAAAtctgaaacggcacattgaactgattggatatgaagatgaaatctgacgcatagtttcagtgttaaaactgataaaataattgtggtctgtggttctatatgggctgtggcaataattttgaaaaataatagcttgcAGCcagtgtataaagtactagaaagcaatacttgagtacaagtacaagtatACTAGAActgaaaaagactttggtagaagtgaaagttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34931 lncRNA upstream 103595 8113186 ~ 8113391 (+) True G26063
TU34888 lncRNA upstream 370247 7846501 ~ 7846739 (+) True G26028
TU34885 lncRNA upstream 381805 7834903 ~ 7835181 (+) True G26025
XR_005638768.1 lncRNA upstream 500828 7713299 ~ 7716158 (+) True LOC120555855
TU34815 lncRNA upstream 543045 7665796 ~ 7673941 (+) True G25959
TU34957 lncRNA downstream 32681 8250059 ~ 8250273 (+) True G26089
XR_005638851.1 lncRNA downstream 37368 8254746 ~ 8256037 (+) True LOC120556411
TU34961 lncRNA downstream 46323 8263701 ~ 8263943 (+) True G26093
TU34963 lncRNA downstream 47554 8264932 ~ 8265165 (+) True G26095
TU34964 lncRNA downstream 60929 8278307 ~ 8279059 (+) True G26096
XM_039794990.1 mRNA upstream 70059 8140884 ~ 8146927 (+) True mex3b
XM_039794987.1 mRNA upstream 147319 7939212 ~ 8069667 (+) False efl1
XM_039794985.1 mRNA upstream 147319 7941560 ~ 8069667 (+) False efl1
XM_039794984.1 mRNA upstream 147319 7941637 ~ 8069667 (+) True efl1
XM_039794986.1 mRNA upstream 147319 7941637 ~ 8069667 (+) False efl1
XM_039796114.1 mRNA downstream 327883 8545261 ~ 8601676 (+) False LOC120556467
XM_039796113.1 mRNA downstream 329809 8547187 ~ 8601678 (+) False LOC120556467
XM_039796111.1 mRNA downstream 329809 8547187 ~ 8601677 (+) True LOC120556467
XM_039796112.1 mRNA downstream 341836 8559214 ~ 8601677 (+) False LOC120556467
XM_039796115.1 mRNA downstream 344122 8561500 ~ 8601676 (+) False LOC120556467
TU34538 other upstream 1927210 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1927210 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1928909 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1950278 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 2164089 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 536323 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 851351 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1349453 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 1629899 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 3814243 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile