RNA id: TU34954


Basic Information

Item Value
RNA id TU34954
length 576
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G26086
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8227905 ~ 8228480 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctggatccatgaaataactggcctttaaaaataaaaatctgcctgtctctatgggaatttaacataggggctcacttttttagacattgatggctgtgtgttgagttattttgaggggacaatacatttacactgttatacaagctgtacacttaatactttacattgtagcaaagtgtaatttcttcagtgttgtcccattaaaagatataatgaaatatttactaaaatgtgaggggtgtactcacttttcaCAGATACTGTACCCTAAAAAGGTAAATTTAAGAAgatgtgtgaaaatgcccttagacctcagaggatTAAGGTTCATTAGTCTGGTTAATGTGCTCTCTGCTAGTTGGTGTCTGTATTCTGCCAAATAAACACCACTTTACAATTGCAAGTGGACTGCTTTTTTGTAGTTTATGAAGATAGAAAGAAAGGTGACCCTTCTTTagagaattttttttagcagaacTTCAGGGGAATTGCCCTTTTAAACGTTTGTGTATATTGAATCAATAATATAAGATGCTCATCTTAAAAAATCTGCATAGTCAATATTTATATCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34938 lncRNA downstream 36164 8134148 ~ 8191741 (-) True G26070
TU34905 lncRNA downstream 319644 7907993 ~ 7908261 (-) True G26045
XR_005638766.1 lncRNA downstream 325688 7900489 ~ 7902217 (-) True LOC120555852
TU34886 lncRNA downstream 391580 7835898 ~ 7836325 (-) True G26026
XR_005638765.1 lncRNA downstream 396282 7794782 ~ 7831623 (-) False LOC120555851
TU34956 lncRNA upstream 50 8228530 ~ 8228745 (-) True G26088
TU34967 lncRNA upstream 142101 8370581 ~ 8370908 (-) True G26099
XR_005638678.1 lncRNA upstream 158496 8386976 ~ 8387687 (-) True LOC120555295
XR_005638811.1 lncRNA upstream 167788 8396268 ~ 8400486 (-) True LOC120556139
XR_005638722.1 lncRNA upstream 261804 8490284 ~ 8490741 (-) True LOC120555518
XM_039794989.1 mRNA downstream 883149 7330708 ~ 7344756 (-) True lmnl3
XM_039794988.1 mRNA downstream 883150 7330708 ~ 7344755 (-) False lmnl3
XM_039794980.1 mRNA downstream 921575 7304084 ~ 7306330 (-) True LOC120555843
XM_039795112.1 mRNA downstream 1175428 7045853 ~ 7052477 (-) True LOC120555919
XM_039795925.1 mRNA downstream 1185764 7028566 ~ 7042141 (-) True hdgfl3
XM_039795142.1 mRNA upstream 265873 8494353 ~ 8496635 (-) True LOC120555934
XM_039795362.1 mRNA upstream 402128 8630608 ~ 8697622 (-) False il16
XM_039795361.1 mRNA upstream 402128 8630608 ~ 8697622 (-) True il16
XM_039794376.1 mRNA upstream 504939 8733419 ~ 8737410 (-) False tlnrd1
XM_039794378.1 mRNA upstream 531121 8759601 ~ 8979144 (-) False LOC120555589
TU34939 other downstream 81004 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 883149 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 1583299 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 2060376 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 5950814 2275475 ~ 2277091 (-) True G25228
TU35108 other upstream 624307 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 1066588 9295068 ~ 9296746 (-) True G26298
XR_005638773.1 other upstream 3248284 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 3414751 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 3415091 11643571 ~ 11669269 (-) False LOC120555651

Expression Profile