RNA id: TU34961


Basic Information

Item Value
RNA id TU34961
length 243
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G26093
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8263701 ~ 8263943 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaagctaacaacggtgtccgatttcaagttaatgaatatttgtgaatttcagaggaattctaagaggaggctagctagctctcattgatagagctacatccagcagcaggctctatcaatgagactcgcggacaagcggcgtttatttccccaatcgtttgtttaaataactcaacacattataattacacacattaaaagattaactgaaacctgtggtaagagattgctggcgtaacaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638851.1 lncRNA upstream 7664 8254746 ~ 8256037 (+) True LOC120556411
TU34957 lncRNA upstream 13428 8250059 ~ 8250273 (+) True G26089
TU34943 lncRNA upstream 46323 8216986 ~ 8217378 (+) True G26075
TU34931 lncRNA upstream 150310 8113186 ~ 8113391 (+) True G26063
TU34888 lncRNA upstream 416962 7846501 ~ 7846739 (+) True G26028
TU34963 lncRNA downstream 989 8264932 ~ 8265165 (+) True G26095
TU34964 lncRNA downstream 14364 8278307 ~ 8279059 (+) True G26096
TU34966 lncRNA downstream 106639 8370582 ~ 8370825 (+) True G26098
XR_005638723.1 lncRNA downstream 233949 8497892 ~ 8498856 (+) True LOC120555519
TU35084 lncRNA downstream 498022 8761965 ~ 8762290 (+) True G26206
XM_039794990.1 mRNA upstream 116774 8140884 ~ 8146927 (+) True mex3b
XM_039794987.1 mRNA upstream 194034 7939212 ~ 8069667 (+) False efl1
XM_039796114.1 mRNA downstream 281318 8545261 ~ 8601676 (+) False LOC120556467
XM_039796113.1 mRNA downstream 283244 8547187 ~ 8601678 (+) False LOC120556467
XM_039796111.1 mRNA downstream 283244 8547187 ~ 8601677 (+) True LOC120556467
XM_039796112.1 mRNA downstream 295271 8559214 ~ 8601677 (+) False LOC120556467
XM_039796115.1 mRNA downstream 297557 8561500 ~ 8601676 (+) False LOC120556467
TU34538 other upstream 1973925 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1973925 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1975624 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1996993 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 2210804 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 489758 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 804786 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1302888 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 1583334 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 3767678 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile