RNA id: TU34963


Basic Information

Item Value
RNA id TU34963
length 234
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G26095
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8264932 ~ 8265165 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctttgatatcatgttgtttacggagacggagaaccaggaaatgagtcggggataTGTCAATGGGAAAAGCAAgctactaagccacgcccacggcagtcgctatgacgaccagccacgctgaggcggtactaaaatctgcaatggaaaacggacgcacagcgcgtcgaggcgagtagagtcgagtagagtcgaggtgagtcgagtaggtaccatgtaatggaaaaacgccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34961 lncRNA upstream 989 8263701 ~ 8263943 (+) True G26093
XR_005638851.1 lncRNA upstream 8895 8254746 ~ 8256037 (+) True LOC120556411
TU34957 lncRNA upstream 14659 8250059 ~ 8250273 (+) True G26089
TU34943 lncRNA upstream 47554 8216986 ~ 8217378 (+) True G26075
TU34931 lncRNA upstream 151541 8113186 ~ 8113391 (+) True G26063
TU34964 lncRNA downstream 13142 8278307 ~ 8279059 (+) True G26096
TU34966 lncRNA downstream 105417 8370582 ~ 8370825 (+) True G26098
XR_005638723.1 lncRNA downstream 232727 8497892 ~ 8498856 (+) True LOC120555519
TU35084 lncRNA downstream 496800 8761965 ~ 8762290 (+) True G26206
TU35085 lncRNA downstream 501397 8766562 ~ 8766987 (+) True G26207
XM_039794990.1 mRNA upstream 118005 8140884 ~ 8146927 (+) True mex3b
XM_039794987.1 mRNA upstream 195265 7939212 ~ 8069667 (+) False efl1
XM_039796114.1 mRNA downstream 280096 8545261 ~ 8601676 (+) False LOC120556467
XM_039796113.1 mRNA downstream 282022 8547187 ~ 8601678 (+) False LOC120556467
XM_039796111.1 mRNA downstream 282022 8547187 ~ 8601677 (+) True LOC120556467
XM_039796112.1 mRNA downstream 294049 8559214 ~ 8601677 (+) False LOC120556467
XM_039796115.1 mRNA downstream 296335 8561500 ~ 8601676 (+) False LOC120556467
TU34538 other upstream 1975156 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1975156 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1976855 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1998224 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 2212035 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 488536 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 803564 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1301666 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 1582112 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 3766456 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile