RNA id: TU34966


Basic Information

Item Value
RNA id TU34966
length 244
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G26098
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8370582 ~ 8370825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttttttactttaacgtGTAGTGGTCTTTGTGAACCTCTGTTTGTCAGAATGACCATAACTCGACAGAAGGTCTCTTTTTACAGAGTAGACAAATATGACTTTACATTAATGCTCTGGCCTGATAAAGTACGTTTtacacacataacgttacatgtaACAGCATGACAGTTATGCCTTACAAAATATGCCAAGTGGGCAAACTTTGAAGGCTTCTACCACAGCCTAACTGTATCAGAATACAC

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection
ko05310 Asthma
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05416 Viral myocarditis
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34964 lncRNA upstream 91523 8278307 ~ 8279059 (+) True G26096
TU34963 lncRNA upstream 105417 8264932 ~ 8265165 (+) True G26095
TU34961 lncRNA upstream 106639 8263701 ~ 8263943 (+) True G26093
XR_005638851.1 lncRNA upstream 114545 8254746 ~ 8256037 (+) True LOC120556411
TU34957 lncRNA upstream 120309 8250059 ~ 8250273 (+) True G26089
XR_005638723.1 lncRNA downstream 127067 8497892 ~ 8498856 (+) True LOC120555519
TU35084 lncRNA downstream 391140 8761965 ~ 8762290 (+) True G26206
TU35085 lncRNA downstream 395737 8766562 ~ 8766987 (+) True G26207
TU35086 lncRNA downstream 396211 8767036 ~ 8767243 (+) True G26208
TU35088 lncRNA downstream 402255 8773080 ~ 8773325 (+) True G26210
XM_039794990.1 mRNA upstream 223655 8140884 ~ 8146927 (+) True mex3b
XM_039794987.1 mRNA upstream 300915 7939212 ~ 8069667 (+) False efl1
XM_039796114.1 mRNA downstream 174436 8545261 ~ 8601676 (+) False LOC120556467
XM_039796113.1 mRNA downstream 176362 8547187 ~ 8601678 (+) False LOC120556467
XM_039796111.1 mRNA downstream 176362 8547187 ~ 8601677 (+) True LOC120556467
XM_039796112.1 mRNA downstream 188389 8559214 ~ 8601677 (+) False LOC120556467
XM_039796115.1 mRNA downstream 190675 8561500 ~ 8601676 (+) False LOC120556467
TU34538 other upstream 2080806 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 2080806 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 2082505 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 2103874 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 2317685 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 382876 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 697904 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1196006 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 1476452 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 3660796 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile