RNA id: XM_039794378.1


Basic Information

Item Value
RNA id XM_039794378.1
length 4937
RNA type mRNA
GC content 0.56
exon number 29
gene id LOC120555589
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8759601 ~ 8979144 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagtgggcgTGTCTTCCCTCCAGCTGGAGCAACTGGAGGCGGCGCTGCACCGTGCGTCTTGACCAGGAATGGCCGTGTCTTTGCGCTCCGACACCGGCCGACTCACTGACAGCGCTTCGCTCCATCACTGCACTGCTCCGAGCTGCGCGTCTCTCAGCCTCCACACCGGGGACTAGACACGGATTACACGCTAGTTCGGTGCCTTTGGTGGCTTCCCACTGTGATCTCGGCACACCCACCGTGGAACCCCGTCTGACGTCCATCGGGAGGTCTGCAGCATCCTTTGAAGGTCTCAGGTGTGATGTCGGTCCGCGGCGGGCTGAGAGAGATGAAGACATGTGCCACCATGTTTCTGGCAGTTCTGCTGCTCCCCAGCATTCAAGCAGtGTGTCCGGATAAGGAGCCAGGACTGCAGCCATGGATGCCAGGACACAGTGAAGACCACCGCGTTACGATCGGCTACGGCAGGAAGGTCCTCCTCACAACTTCAGCTACGGTCCACTCCATTGAGATTCTTAATGGAGgGAAGCTGGTGATTGCTGACACTAACCGGGCCATACTGCTTCGAACAAAACACATTCTGATCGGGAACAAAGGGGAGCTGCACATTGGAAGCCCAGACTGTCCTTATAAAGGCAACCTCACCATTTCCCTTTTTGGAAGATTGGATGACAGTGATGAGGAACACAGCTACTTTGGGAGGAAGTACATTGGCGTGGGGACAGGAGGGACACTAGAGATCCACGGAAAGAAGAAGCTGTCATGGACATTCCTCAACAAGACCCTCCAGCCCGGAGAGAGCAACCAGAACAACTACCTGTTCCAGAGAAGCTGGGGGAGCCGAGGTATCATTATCCACGCCATCGACCCCAAGACTGGAGAGGTGCTGCACGAAGACAGGTTTGACACATATCGTAGTAAGGATGAGAGTCGCCGCCTTGCAAAGTATGTGGATGGAGTGGAGGCGGGGCTCATACTGGCCATGGTGGTCAATGACGAGGGCTCCAACAACTTGGAGGACTCTGCCAAGAAGAGCCTCTTCAGGCTGGGCAGCCGTCACATCAACACTCTGGGATTTCGGCATCCCTGGACCTTTATAGTGGCAAAAGGAGATGCTTCTTCTGCTGTGGAGGGTCACGCTGTCTACCAAGGAACCAAAGCCTCCTCAGAGGCCCGGAGCTCTCGTGTTTTTCAGTCCAGTTTTGGGGACCATTTCACCATCACCATCAGCAGCCAGTGGGTGCAAGAGGCAGAGTGGACAGAATGGTTTGACAGGGATGATGAGAGGGGATCTGGAGACTGGGAGAAAGTGTCTGACCTGCACGAGGCCTACCCAGACAGACTGTGCAGCAGTCCACTTGACATCCAGGCTGAAACCCATGATGGCATAGCAGCCAACCAAACCGGAGATGTGATCCACAAAAATGACAAGGACTACGGCTTTGTCTGCCGCAATCAGGACCAGGCTCATGGCCTCTGTCGCAACTACAGGGTCCGCTTCCTCTGTGGAAAACTGGTTCGCCCGCAGGCCTCCATCTCCATCGACATGTTGTCCAACAGCAGCATCCTGGAGCTGGCCGACCAACCAGAGGGCTGGGGGCCCGGGGATCGGGTAGTGGTGGCCAGTACCGACTACTCCATGCACCAGGCCGAAGAGTTTACCCTGCTGCCCTGCCCTACCTGCACATCCAACCAGGTCAAGGTCCAAGgtAAGGCCCAGTTCACCCACATGGGAGAGGAAGTGGACGGGGTGGACATGAGGGCGGAGGTGGGCCTGCTGAGCCGTAACATCCTGCTCCGTGGAGAGATGGAGCCCGGCTGCTATGGCAACGAGGCCTGCAAATTCTTCGACTTTGACACTTTCGGCGGACATTTGAAGgTGGAGCGGGGCTTCAGGGCCGTTCATATATCTGGGCTGGAGCTGCAGCACATGGGCCAGCAGACCATGGGACACTACCCGGTCCACTTCCATATGAACGGAGACGTGGACGCGAGGGGAGGCTACGACCCCCCCACCGCTGTCAGCGGCCTGTCCATCCACCACTCCTTCTCCCGCTGCGTAACCATCCACAGCTCCAACGGACTGCTGGTAAAGGATGTGGTGGGCTATGATACGCTGGGTCACTGTTACTTCACGGAGGATGGTCCAGAAGAGAGGAACACGTTCGACCACTGTCTGGGCCTGATGGTGCGAGCCGGGACCCTGCTGCCTTCGGACAGAGACAGCAAAATGTGCCGCGACATCACTGACGGAGCCTATCCAGGATACGTGGCCAACCCACGGCAGGACTGCAGCGCCACTTCAACTTTCTGGATCGCCAACCCCAATAACAACCTCATCAACTGTGCTGCTGCGGGCTCAGAGGAGACAGGTTTCTGGTTCATCTTCCACCATGTGCCCACGGGCCCCTCAGAGGGGCTGTACTCCCCcggacacactgaacacacacctATGGGCCAGTTCATCAACAACAGAGCCCATTCCAACTACAGGGCTGGAATGATCCTTGATAACGGAGTAAAGACCACCCAGGCAAATGACAAGGACAAGAGACCCTTCCTGTCTCTGATTGGAGCCAGGTATGGCCCCCACCAGGATGCTGACCCTTTCAAACCCAGAGTCCCCGCTCTGATCCACCATTTCGTGGCCTATAAGAACCAGGACCACGGAGCCTGGCTGAGAGGAGGGGATGTCTGGCTGGACGACTGCCAATTTGCTGATAATGGCATTGGCCTCACTCTGGCGAGCGGAGGCACGTTTCCAGATGATGACGGCTCGCGTCAGCAGGTGAAGAACTCGCTGTTTGTGGGTGAAAGTGACAATCGTGGGATGCCTCTCCCTGACAACAGGATCTGGGGCCCCGGGGGTTCTGACCTCACTGGCAGAACCCTGCCACGTGGCATAGATTTTCCTATCCGGGGCATGCAGATCTATGATGGGCCCATCAACATGCAGAACTGTACATTCCGGAAATACACAGCGTTGGATGGACGGCACACCAGTGCCTTTGGTTTCAGGCTGAACAACTCGTGGCAGAGCTGCCCCAATAACAACGTCACCGACATAATCTTTGACCACGTACCTCTCACGTCTCGGGTGTTCTTTGGGGAGCCGGGGCCCTGGTTTAATAAGATGCAGATGGACGGGGACAAGACGACCATCTTCCACGACATTGACGGCTCGGTCAGCGAGTATCCCGGAGCCTTCCTGGTCAAAGAGGACAACTGGCTGCTCCGGCACCCCGACTGCATTGACGTGCCCGACTGGAAGGCTGCTATCTGCAGCGGCCGCTACGCACAGATCTACGTCCAGACCCGTAACCCTGCCAACCTGAACATGCACATAGTGAAGGATGAGTACCCGGACCGGCCTCTGACACTGGAGGGCGCCCTGGGGAAGAAGAAGCACTACCAACAGTTCCAGCCGGTGATCACACTGGCCAAAGGCTACACCATCCACTGGGACCAGGCGGCGCCGGCCGAGGTCACCATCTGGCTCATCAACTTCAACAAAAATGACTGGATCAACGTGGGCCTCTGCTACCCACAAGGCACCACTTTCACTGTCATCTCCGACATCCACAACCGCCTGACCAAGCAGACCCGCAAAACCGGTGTCTTCACCCGGACCTCGCAGAGGGACAAGATCCAGCACTCACACCTGGCCAGAGGATACTACTACTGGGAGGAAGACACcggGCTGCTCTTCCTGAAGGTGAAGGCCCATAACGACAGGGAACAGTTTGCCTTCTGCTCTGCCAAGGGCTGTGAGAGGATGAAGATCACAGCCGTCATCCCTAAAGGCAGCCCCCCCAGCGACTGCATGGCCCAAGCCTACCCCCTGCACTCCGAGATGCCTGTGGTGGACGTACCCATGCCCAGAAAGATACCTAATCACTCAGCAGAACACTTCCTGGAGGTCAGACTGGAGTCCTACAATACTCGGTTCTTCCACATCAAGGAGGACTTTGCCTTCACTGAGGTAAACGGCAGGAAGTTGTACCAACCAGAAGACGGGGTGCAGCTGACAGTGATCGACGGGCATGATGGGAATGTGGTGGAGAACAAAGGCTTCCGGAACTCCATCTTACAGGGAATCCCTGCACAGATCGACAACTACGTCAGTGGACTGAGAGACGGTTCCATTGTCCTCATTACGTCTAAGGGCCGTCTGGTTACCAGAGGATCCTGGACTAAAGTCCTGGAAAGACTTGGAGCCAACAAAAGCATCAAATTGAAAGATAAGATGGCATTTGTGGGCTTCAAGGGCTCCTTCCACCCTGACTGGATCCATCTGGAGGTGGACGCCGACCGGGCCAAGATCCACCAGGTCCTGCCTGTCCCTGTGGTCCACAAGATGAAGCtatgagagagaggcaggcaggcagagtgGGGAGGACAGCCAAGAGACTATGTAACCCCTGAGATACTGACACACATTACCCGACGCCCCACCCCACCCcgacaaaaaaaatgcaatgacacacacgtacacatacagtacacactgcCGGCACTGCAGAGTCAGCTGCTCCAAGCCATTGTCCAGGATCAGTGGAGTTTTCTCTAGGTTTGGCAGGGGAAAAGAATGATGGATTTGGTGTGTTGGAAAAAAGGGAAGACCCTCTCCCAGAGCCATCACTGCCCACAATGAACTCTCTCTGTGTAGGTAATCTCATCAGTAGAGGGTTTAAGGCTGCATTCAGATTAGATCAGGTAGTCCGGCTACCCTGCAGCAGTGGGGGAGTGTCACTTCAGTTcaatacatatttttctctTACCCGTAGTGATACTGATCAGTCTAGATCAGAGGTCTTCAACAGGGGggccgggacccctaggggtcTAAACATaagtccaacatattattagcaaatataaatcagccaatttgtgaaaaaaaaaacacaatcataGGCTTACtagcctataggta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35105 lncRNA downstream 793 8733454 ~ 8758808 (-) False tlnrd1
TU35106 lncRNA downstream 793 8753438 ~ 8758808 (-) True tlnrd1
TU35071 lncRNA downstream 95069 8663000 ~ 8664532 (-) False il16
XR_005638863.1 lncRNA downstream 200847 8552479 ~ 8558754 (-) True LOC120556469
TU35011 lncRNA downstream 264737 8494655 ~ 8494864 (-) False LOC120555934
TU35163 lncRNA upstream 267963 9247107 ~ 9247424 (-) True G26278
TU35187 lncRNA upstream 317614 9296758 ~ 9297750 (-) True G26299
TU35213 lncRNA upstream 364401 9343545 ~ 9344861 (-) True G26322
XR_005638849.1 lncRNA upstream 372164 9351308 ~ 9354489 (-) True LOC120556388
TU35251 lncRNA upstream 630291 9609435 ~ 9610939 (-) True G26355
XM_039794376.1 mRNA downstream 22191 8733419 ~ 8737410 (-) False tlnrd1
XM_039795362.1 mRNA downstream 61979 8630608 ~ 8697622 (-) False il16
XM_039795361.1 mRNA downstream 61979 8630608 ~ 8697622 (-) True il16
XM_039795142.1 mRNA downstream 262966 8494353 ~ 8496635 (-) True LOC120555934
XM_039794989.1 mRNA downstream 1414845 7330708 ~ 7344756 (-) True lmnl3
XM_039794769.1 mRNA upstream 174098 9153242 ~ 9229573 (-) True arnt2
XM_039794771.1 mRNA upstream 176117 9155261 ~ 9229577 (-) False arnt2
XM_039795797.1 mRNA upstream 329453 9308597 ~ 9325288 (-) True fah
XM_039795210.1 mRNA upstream 1148834 10127978 ~ 10231722 (-) True chsy1
XM_039795882.1 mRNA upstream 1254320 10233464 ~ 10241227 (-) True selenos
TU34939 other downstream 612700 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 1414845 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 2114995 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 2592072 6156222 ~ 6167529 (-) False LOC120555534
TU33896 other downstream 6483592 2275475 ~ 2276009 (-) False G25228
TU35186 other upstream 315924 9295068 ~ 9296746 (-) True G26298
XR_005638773.1 other upstream 2497620 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 2664087 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 2664427 11643571 ~ 11669269 (-) False LOC120555651
TU35894 other upstream 2981557 11960701 ~ 11961772 (-) True G26891

Expression Profile