RNA id: TU35121


Basic Information

Item Value
RNA id TU35121
length 4657
RNA type TUCP
GC content 0.44
exon number 2
gene id G26236
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9068729 ~ 9155343 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagagagagagacagagagagagagagagagagagagagagagaaagagagaggaacgGCAGCAGGCGGAGACGGACAGCTTCTCTCCTGCAGCGGTTTGGCAGCGGTGGTGTGCAAGAGGCAGATGGAGGTGAACTTCTTCAACACTCacagaaatatatgtgtgtgtgtgtgtctacagtcACTGCAGGTACAACCAGAGGAGGCGATCGGTCGAGtactgaggcctgtactacgaagcaagatcaacatggcctggatttctttcagtaatccggcttcacctaacctaacaaccgcgatCCTGGATAACCGGTGTCACGaaggtggttatcaactagttcaatcaacccagggtttcccaatccagcggcgcgcgcgttcacataaaagaggcgatgtttgcgcaccacgaccaatcgcaaaccagagccgcatgttatTTATAAGAAAAGCACATTTTAACAGAATCGGTtttccaggaaaaaaaaaaaaatcactatcacttccccatcaatCAGGACCAatatctgaccataattacgcttgggctttccataaactgtcgttgctttagcctattatttcagttgcaaccctggcagtgggaagtgatcgtgagaacaaataaaacatataaaaacataattcaaaccgatgtgcgcattggcgacacacagctcaagaagccgacatgtaattccctcccattaaaatatatataaaaatacccatcagggaatgttaacagggttgtcAGTCtctaaataattaaatttttatgagtgcacctctctctctctctctctctctctctgcaccgagctccgcctgatcttctagtGACGTCGTTATCgaccgagtattgattggtcagtgggcggtgctttaacaccggttgatctctgatctccaacttaacctgctcccaaccaggttaggtgttcagcatgagttaccacggcgattgaacccgataacaactgatccaccttcgtagtacagaaaatcctgggttgagccttaagttagctcgttaacgccaaatcctgcttcgtagtacaggcctctggtcctactattatttattttttaaactttattggtCTTGCTGTGCTGtgagtaagtgagtgagtggCATCCTGTCtggactgacagctgaagtcaacTGATACACTTATTCCTGAATGGATGTCACCATGggtacgttcagactgcaggcaaatcCGATTTGTTTCCATAATCTGATCTTTAAGACAGACTGTCTGCGCTGTTATTTACAAGCGATCAGATCAGGATTTGTGTGTCCAGACATCACCAACCTATCTGCATGGGTTGCTGTGGTAACAACGTAGTCAGCGTAGCTGTGCTGGTGACACGGCTACTGACAGCAGGGGAAATGTATGAGCCGGTGCGTGTTATTGtccaacacagtctcacggcagttcgtgaaatggtcacgtcaTTTTTTCAGTCTATTGATTCATGTAAACGGACACGTTGATCTAGTGACAacaaggaaacgtgacacgcgggacacaatccccggtctctgggggacgcagGACAAGAAGAATGGGGAAAGGAAACGGAcatgatccccggtctccggggtgaaagtcctgtgttgtttgacccatccaccacacctttcatactactcgctaccgtagtcgctcttaatacattagtttaaaaaacgtgctgaccatcacgaaaaaaactagataaatgtgtctgtgtacacaaatcaatagattaaattacgtgaccatttcGCGAACTGCCGTAAGACTGGATTGTATTGCCACATCGTTGGCTGTGAACCAGGCAACTGTGTATTACCCTGTGTGCTCACACTACAACATAATCATGCTGGGAAGTAAAGGGACTGGCGCTGCCAAATATTTACAGAAACCGTTTTATTTTATGGGATGTTGAGACTGTGATGAGATCACAGCtgctcactctcacacaaaccTATTTTcaacatcttaaaaaaaaagagaagctatttcagtttttaatgtGCACAGAGTAAGCCAATGTTTTGtaatctttttttcctccacacAGTCACAATCAGAACTCTGAAACCTTTGGCCAACCTTTCTGGAGTAGGACAGGTCTGAATTCCTCAACAGATAAGTCATGATTTATTACCATGGTGAAACTTTTTACTGTTAAATCAAATGTGAAGATATCGTGCAGCTGAACTCAGTGTCAGCTCTCCACCAACACCATcactaaagccctattcgcacgggataagtattacctggtgacctccagtcatttgtaataatcgcggaggttgtctgtgatcttaatcccgtgcgaatcggtcatgtctgtaatttgtaaagtaataattcccccgcaaatgacctaccatatttcgccgaaaacggaggtcctgtgataatattagtcccgtgcgaatcggcatctctgtgatttggggtctaactggctgcgttgtcaattataaatgaaaagttttgacatcatttccgggggataatgtctgtaaatttgagtaaaatacagacttcagttatcccgtgtgaatgcgccagacgaaatacagacgtgtgggggtaatttataaactacaagaggtccccaggtaatacttatcccgtgcgaatagggcttaagagTGACATGTTAAATGATATAATAACATATTACTGTAAAATCAAGATATTACAATTTAGGTCAAATTTACTGCAGCGTGTTTCAGTTGTCCAACAACATTAGCTTAACTAATCCTATCAAAAAGGCCTGCATGAAACAACTTGATCCGGAACAGACCGGCTGCAGCAGAGACTCTCTGGGCTACTACCTTAAGATGACATGGACTGTACTAACTGTTAATGCTCTGCAGCAGTTGAGGAGCAGTCACCCTGTAGCGTACTGCCTGAAACGTTCAGAGGTGCACGACCACGCGCCACGACAACTTGCGGAGACGTCATTTCATGGCTTGCGCACCTCGCGCTGTGAACACCGCAGCGACCATAAACCTAGCTTTAACCCAGCTTGACAGAGAATGTCCCTTTGTTGTTGACAGCAGAATGACTGATAAGTGTGGAGACAAACGTGTTAAAGCAACTAGGCAGTAACTAGTTGTCTAAcgcattattttattaattaagtaACTCAATTGCCTGTCCACAGCTAATCTTGCATAGCCTACTACTAGACCCATTAGCCTAatattttttgtgcacatttctGTGTGGGCCTACCGTAAACCATTATTAAACAGTCCCGGGTCTTAATTATTAAAGATGCGGCAGCATTGCCTCTGCTCGAAGATGCGGacgtagatggatggatggactatTTTAACACTGAATTTTCATTATTTAACAGATCAAACAATTTGCGCCGTTGATACACTTTGTATGGAACACCATTGTGCCTTTGGACTTCGCGTTAAAGGCGGAGGCGTTACTTTCCCCCACTTTTCTCCAAAACCATTGGTCCAAAAAACCAATCAATGGATATTCCCCCGGAGAGCTTGCACACAAACTTGCTTGTTTAGCATTCAACAACAGAGCAGTGCTGAGGTGCGCTGAAAGACAGTACGTATACGGAACATTGGGTGTAGTGTATGTGCAATTGGCATAGTCCTAAATTTTGGTCATCTGCGTTGATGCTTGCAGACATGAACCGCTGACACAAATGGTGCCGATATTATATTgacatcgatatatgagactcgatatcatcttagatttcgGATATCGTGACACAAGtgatgtcttttcctggttttaaaggctgcaatagtgaccaatagtcaaccctataATATCGCTGCAATATCGACCTTGAggttatttgttaaaaaatatcTTGATATCTGATTTGTTCCATATTGCCATAGCGCTACCATGTGGACATTTTTAGAGAGAGGAAGTGTAAAATCTTGAATAATAATACTGATACTAGTCTCTGACAAATACAGCTATAATCACATGAAGGAAGAGGTTTAACACACTTCAACCGCCTCACAGAGAAACCTGTCCGGTACGCTCAGAGAACGGCAATCTGGTCAGGAAAGACTTCAGAGATTTGGTCCAATGTATTCTGGAGCACACGGCCATGAGGCAACAAACTTTATTAGATGACTAGTGTTTCATTAGAGTCAAAAGAGCTACAATCACGTGACTGCCCTCCTCTGGTCATGCTGGCGCTGAATGCAGTGAACAATTTCAGCAACCTGAATGTCCCGTTTGTTCTAAGAGCTCGAGACGATGTGTGTATCATTGTAATGACAGTCAGAGAGCTGATCCAGGTTGATTGGTGTGCCTTCCATCTGTCAGCAGGGTTCCTCTTTACAAAGATGAGGTATGTGTAAGTTCACAGATAAATACTGCAGGCCGCGGAGCCCAAACGGTGAGTGaactgtgtgttgtgtatgacACGTGTAGACAGACatcacatcagctgtgtgttggCGATCCAGCAATattagaaaaatgaaaacaacatgACAGATGAATGCAAACATCAGTCCAGTTCTGAGAGGGAGAGTGATGgagaaaaggttttttttctttactcagAGAAGGGTGGGAACATGCCGAGGTCGGCAAAGTCCTCAATGTTGTAGTTGGCTGTTCCCTGGGTAGGATCGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35098 lncRNA upstream 247745 8820753 ~ 8820984 (+) True G26218
TU35097 lncRNA upstream 252113 8816407 ~ 8816616 (+) True G26217
TU35096 lncRNA upstream 255697 8812828 ~ 8813032 (+) True G26216
TU35089 lncRNA upstream 293067 8775447 ~ 8775662 (+) True G26211
TU35088 lncRNA upstream 295404 8773080 ~ 8773325 (+) True G26210
TU35158 lncRNA downstream 81009 9236352 ~ 9238565 (+) True G26273
TU35161 lncRNA downstream 85322 9240665 ~ 9244453 (+) True G26276
TU35185 lncRNA downstream 144145 9299488 ~ 9300207 (+) True G26297
TU35205 lncRNA downstream 177887 9333230 ~ 9348325 (+) True cers3a
TU35228 lncRNA downstream 305574 9460917 ~ 9473100 (+) True G26335
XM_039794377.1 mRNA upstream 317849 8745162 ~ 8750880 (+) True mesd
XM_039795650.1 mRNA upstream 447017 8604276 ~ 8621712 (+) True stard5
XM_039796111.1 mRNA upstream 467052 8547187 ~ 8601677 (+) True LOC120556467
XM_039796102.1 mRNA downstream 105868 9261211 ~ 9296717 (+) True LOC120556464
XM_039795961.1 mRNA downstream 177886 9333229 ~ 9378611 (+) False cers3a
XM_039795962.1 mRNA downstream 177886 9333229 ~ 9378611 (+) False cers3a
XM_039795147.1 mRNA downstream 235765 9391108 ~ 9604462 (+) True adamts17
XM_039794581.1 mRNA downstream 476664 9632007 ~ 9642958 (+) True lins1
TU35083 other upstream 308428 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 2778953 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 2778953 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 2780652 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 2802021 6264974 ~ 6266708 (+) True LOC120555541
TU35242 other downstream 411488 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 691934 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2876278 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3954414 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 4079892 13235235 ~ 13237819 (+) True LOC120556202

Expression Profile