RNA id: TU35186


Basic Information

Item Value
RNA id TU35186
length 1679
RNA type TUCP
GC content 0.43
exon number 1
gene id G26298
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9295068 ~ 9296746 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaataataatctgacgaaaaacaataggtttcttcgcactttcagtgcaaggcaccgttggggccttgcactttcgtgctcgggcctAATAATAATAGGCGCAAAAGCcacccagtgtttcctctatgttgatttctgccgccacagtatcagaaatagggcagacgcacaaaagggtttccgctatgtacatgtagtatataaagtcataattCCATGACTCTACAGAGCcgtgtgctctactgaactcaagcgatctgtcatcctctctctctcccctcaactggaacagtgacaggacgtcatcactcgcgaagtcatagcaaccagataaacaacagggcgagtacacTTGTCGACGAAATCCGCAACTTGAAATCCGCACTCACTCAGCTGGTGCGTGGCAGGGCCTTCTGAACTCTATGGGGGAACTCACTTGATTCCTCTAACTGttccactgtttaaaaaatagcAGCGCAACCTGGTGGGCGTTATCCTGGTAATTTAtctgcgtgagaaatacaaggtgtgGCGTGTGAGCGTGTGAACGGGTTGAAATGCGTGTGTCTCACGCCCAATGCGTGAGACTTGAGAGGTATGTAGCTTGAAGTTACCAAGCTAGCGAAGGCTAACAAGTTAGGATATGCTACCCTGCTTTGCTAGCCCTCTTGGCTTGATGCTCGCTCCTGCAGACAAGTTGCTGCCGCTTTGGTACTTTTGTATTTATCAGTGGCGACTGGTCATCAGGGGCAGGTGGAGCAAAGCCCTGTCAACAGAAAGAACAGCAAACAAATTGTGTAATTTCTTGAAGATTATCTCTTATAATGTATTATCTTCTATGAATATAACATCTTCCTAAATTGCATTTCATTCATgttaggattttattttttttaaagtaaccgCAAGTTTAATATGGAgtggtttgaaaaaaaaaaagtggctaaCTGTTCGCATACAAAAGAAGTCACTCTtctgtttcctttcctttttccttCTCCTATTTGGGGGAGATGGACGGGTTGGTCGAGGACAGATTATACAGATTTGAAACAGATCACAACGGGAGTCATCTGGATAATGCTATGAAGTTGGGCTTACTTATAAGGGTAAATGTCGCTGCCCAAATTGGCAGTGCGTACAGGTGTTCCATTGAGCAACATAACAAACAGGTGGAGGCAAACAGGTACGTGCTCAGTCGGATCATAACATGTATTAAACTGTGTGGAAAATGTGAAACAGCACTGCGGGGTCATGACGAAGCGGCGGACTCTCTAAATCCTGGGAATAATCAGATTGCATTTTACAAAGAGATCAACAATGGTCCGTTACACCACTAtatcagactgatctcatagtTGTGACAAAGATGACCTGATCATTTGTTTAGTGTTGCAGTGAGAGAACAAATACTTTGAGATCAGATTTGATGGTTGGATAGTTTGCTGTTGCTGTACATGTTTTGACATGTGTGTGTCAGCTGTAATCAAGCTTGTTTTCCTGTGGACAtgaacacaacatcaacagTCTTCTTCACATCAACTCTAACACATGATCACAACAAGCGTCTGGCTTATTTGATTGGCTGactgttttctctctgtgtcaccATTGTCCTCTCACAGCTTCACTGAGAAGGTTGGAGGTTTACAGGAAATACTGGATCTTTGCTTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35163 lncRNA downstream 47644 9247107 ~ 9247424 (-) True G26278
TU35116 lncRNA downstream 458159 8836064 ~ 8836909 (-) True G26232
TU35105 lncRNA downstream 536260 8733454 ~ 8758808 (-) False tlnrd1
TU35106 lncRNA downstream 536260 8753438 ~ 8758808 (-) True tlnrd1
TU35071 lncRNA downstream 630536 8663000 ~ 8664532 (-) False il16
TU35187 lncRNA upstream 12 9296758 ~ 9297750 (-) True G26299
TU35213 lncRNA upstream 46799 9343545 ~ 9344861 (-) True G26322
XR_005638849.1 lncRNA upstream 54562 9351308 ~ 9354489 (-) True LOC120556388
TU35251 lncRNA upstream 312689 9609435 ~ 9610939 (-) True G26355
TU35287 lncRNA upstream 344450 9641196 ~ 9679100 (-) True G26371
XM_039794771.1 mRNA downstream 65491 9155261 ~ 9229577 (-) False arnt2
XM_039794769.1 mRNA downstream 65495 9153242 ~ 9229573 (-) True arnt2
XM_039794378.1 mRNA downstream 315924 8759601 ~ 8979144 (-) False LOC120555589
XM_039794383.1 mRNA downstream 316846 8759601 ~ 8978222 (-) False LOC120555589
XM_039794382.1 mRNA downstream 331330 8759601 ~ 8963738 (-) False LOC120555589
XM_039795797.1 mRNA upstream 11851 9308597 ~ 9325288 (-) True fah
XM_039795210.1 mRNA upstream 831232 10127978 ~ 10231722 (-) True chsy1
XM_039795882.1 mRNA upstream 936718 10233464 ~ 10241227 (-) True selenos
XM_039796025.1 mRNA upstream 947378 10244124 ~ 10245386 (-) True zgc:113274
XM_039795220.1 mRNA upstream 962485 10259231 ~ 10292924 (-) True snrpa1
TU35108 other downstream 315992 8852787 ~ 8979076 (-) False LOC120555589
TU34939 other downstream 1148167 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 1950312 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 2650462 6642446 ~ 6644606 (-) False dok4
XR_005638726.1 other downstream 3127539 6156222 ~ 6167529 (-) False LOC120555534
XR_005638773.1 other upstream 2180018 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 2346485 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 2346825 11643571 ~ 11669269 (-) False LOC120555651
TU35894 other upstream 2663955 11960701 ~ 11961772 (-) True G26891
TU35932 other upstream 3007793 12304539 ~ 12304824 (-) True G26924

Expression Profile