RNA id: TU35205


Basic Information

Item Value
RNA id TU35205
length 2841
lncRNA type sense_over
GC content 0.43
exon number 6
gene id cers3a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9333229 ~ 9378611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTTTCcggaggggagaaaaaaaaccttccCAGGTGATTGTGGCTGGGCTGGGTGTGACCCTTAAGAATGTCAAACAAAGAGAGAGTGGCTGGCTGCTTGTCCTAACGGGGGAATAGAGGATTTTACCATCCGTGTTAATTTCCCACAGCAAGCACAGCAGTCAGCCGGCGTGGAAACAACGGCCCTCACCTGCTCTCTCTGACAGCACTGACAGTGGAACGGTGGATAGCAACACCAATTGCTGTCTCTGCTGGGATCAAGCAAAGAGTCCATCTGAAAGCAGAAGACAACCCCATCTTGGAACATTACTACATTACTCAGTGTAGAAATCCTGCTCAGGCAGACATTGATGGGCTGTCTAAGAAAAGCAGTTTGTCAGTGAGACAAGTTGAACGCTGGTTCAGAAGAAGACGCAGTCAGGACCTTCCCGGAGTCCTAAAGAAGTTCAGAGAGGCCAGCTGGAGGTTTGTCTTCTACCTGTTGGCGTTCATAGGAGGAATAGTAGCACTGTACGATAAAGAATGGTTTTATGACACTCGGGAAGTGTGGACAGGTTTTCCAAAGCAGGCATTGATGTGGACAACTTGTACTTCTGGTCAATTTTCACTTTTATACTAGATACTAGAACAAACTCCATGGGCCCCATTTGTCTATATGTGAATATGTTTATTACAAAATCTCACATCATACAGAATCAGTATTAAACTACAGTTTATACCTGACACAGTTTTTCAGCCTCACATGTGACTTAATAGAAATGAGGACAGACAATTAAAATGTGCTTTACGCTGAAAGGCAACAGTTTCTccttaatataatattatctATGATAGGCTACAGGTTAAAGGGGAAATAACAGCTCATAACGAGAGTAGAACTTTGCAGCAGCATATTATCCACCATTACCTCAAGCATTGCTGTTGCCGGTCTGCAGAGGACTGAGTCTAGTACATCAAAATACGTCCCTTAGGTCTTTTGGTCCCTGTACCCCATTTTCAGTTGATTTAGTTTGCTGTTGATTTGCTTGACAGTTCTGTTGAACCCTGCTGCAGCCATCTCACGCTGTAATTGTTTAAACACCAGTTCTGCTTTTGAAGATCCCTCTGGGTTATTTTAAGCTGCTGTCGAGGACCATAATGCAAGGTGGCTGTTTGTCTCCTACACAGACCACTCCTGTGGTTTCATGTccttactgtttttttaaaatggcgCTCATAaagtagcctggaaatccagacacAAATCCGAaggattaagggtctggcattgagtaatgaaaatggcccaactcaaGGGGAAGCatcaagcatgcatttgaaaatctcactgcaaaCAATTGGATAACAcaacgaccaatcacaacaatacacggggtggcgtatccagagccccatcCGCTTAGCTACctgcggagctaactggtagattaaattGTCGTcatgtttagctcgcctctggcccgcctatatcagatacaccgatgattggtgcagctcggctacaagtgCATAGTTAATGAacatcattactcaatgccagagtgactcgctgagcaaattcaaattgtgctcttgcAAGAACTCTGTATTTGGTCACAATAATTCGACCCCCAACCCATGACATCAGTGGTTCTTGGTTCTAAACGAGCAAAGTGTTTGTGCCACTCTGGAACCAGTTTTCCTGACCAAGAAGAGATTATTTGGCTGTCGAAATGCAAAGAACTGGTTTAAGAGTAGGCATTGGCTCCAAAACGGCCCTCAAACTGCCTCAGTGGAAAAGGGGTATGCGACACCTTGTCTGCTGCTAGTTTGTTAGCCTCAAAGCAGGCATAGAAGACATTGATCCTTTCGGCCAGAGAGGTGTCAGCAGTCTCCCACCTGGAGGAGATTGTTTTGTAATCTGTTATGCTCTGTGGTACCTGCCACAAGCGTTTGGAATCAGTTCTAGGTTAAACATTTCTGCTCATTCATTCTCAATACATAATATAACCAGTCACTAGGGCTGGACgatttggagaaaatcaaatatcacgatattttttaccaaatatttttaccgcaacgatattgtagggttgactattggtgctttcacaaaatatttacacaatgagatttttgataaataataagtaatgtggatataatgactaagtgggtaaaggcccAGCCCAGCTCTACCagccactcagcctctctgtcccactacacaacattttaaacatgttaagcTTAATGAGGCTCTGCAGTCACAACTGTGGCAGGGATTACTGTCACAAACAGCAGAAAGTCCTCAGACACCTCACTGAAGGTAAAAGTTAAGTCACCACTGAAGGATCCACCATGAGCATATTAGCAGTTAGCATTTTAGCTAGACCCAGCATGCACCTGTTACATTGGCCACGTAACATTGTGGGTGTTTGTTTTTGGTCACTTAACATGCTCACAGGGTGGTCAGTAGTCAGTGATAAAAcacttttagtttttattttattttacctacGTCGATACAAAATAATCTTAATTATAACCTGTAATGACAtcattctttattttaatatattgtgCATTTTTTGTACTGATGACAAACTGCTAGGCCCAGCCTGATCCCTGAAACTCAGCCTGTAAACATACATCTTGAACATGTATCTTCTCCAGAATGTCAGTTGAATGCTGAGAAACACCTCTCTGGACATAAAGCTCTCTGGGGCTCTGCCCTCATGTGGCGCAGACACACCAGCAGCTGGTGATTTCTTCATGTGACTTATTGTTTTTACTCTGTAACTTATGCGACTTGAAATGTAGCAATGTACAAtacttgaaataaaaaatattccAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35185 lncRNA upstream 33023 9299488 ~ 9300207 (+) True G26297
TU35161 lncRNA upstream 88777 9240665 ~ 9244453 (+) True G26276
TU35158 lncRNA upstream 94665 9236352 ~ 9238565 (+) True G26273
TU35098 lncRNA upstream 512246 8820753 ~ 8820984 (+) True G26218
TU35097 lncRNA upstream 516614 8816407 ~ 8816616 (+) True G26217
TU35228 lncRNA downstream 112592 9460917 ~ 9473100 (+) True G26335
TU35243 lncRNA downstream 258418 9606743 ~ 9608997 (+) True G26347
TU35268 lncRNA downstream 305259 9653584 ~ 9655329 (+) False asb7
TU35279 lncRNA downstream 373898 9722223 ~ 9722683 (+) True G26367
TU35280 lncRNA downstream 378867 9727192 ~ 9727740 (+) True G26368
XM_039796102.1 mRNA upstream 36513 9261211 ~ 9296717 (+) True LOC120556464
XM_039795212.1 mRNA upstream 241720 9056333 ~ 9091510 (+) True abhd17c
XM_039794377.1 mRNA upstream 582350 8745162 ~ 8750880 (+) True mesd
XM_039795650.1 mRNA upstream 711518 8604276 ~ 8621712 (+) True stard5
XM_039796115.1 mRNA upstream 731554 8561500 ~ 8601676 (+) False LOC120556467
XM_039795147.1 mRNA downstream 42783 9391108 ~ 9604462 (+) True adamts17
XM_039794581.1 mRNA downstream 283682 9632007 ~ 9642958 (+) True lins1
XM_039794583.1 mRNA downstream 283682 9632007 ~ 9642958 (+) False lins1
XM_039794585.1 mRNA downstream 305253 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA downstream 306288 9654613 ~ 9677027 (+) False asb7
TU35121 other upstream 177887 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 572929 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3043454 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 3043454 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 3045153 6287048 ~ 6288077 (+) True G25743
TU35242 other downstream 218506 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 498952 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2683296 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3761432 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3886910 13235235 ~ 13237819 (+) True LOC120556202

Expression Profile